PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do011906.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family HD-ZIP
Protein Properties Length: 751aa    MW: 82063.7 Da    PI: 6.5554
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do011906.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.91.7e-183087457
                -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
    Homeobox  4 RttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                  ++t+eq+e+Le+++ ++++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  Do011906.1 30 YVRYTPEQVEALERVYSECPKPSSLRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 87
                6789****************************************************97 PP
2START82.69.2e-271773742198
                 HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT.....EEEEEEE CS
       START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg.....galqlmv 95 
                 +aee+++e+++ka+ ++  Wv+++ +++g++++ +++ s+++sg a+ra+g+v  +++  v+e+l+d++ W ++++ +++l vi +g     + ++ +v
  Do011906.1 177 IAEETLAEFLSKATGTAVDWVQMVGMKPGPDSIGIIAVSHNCSGVAARACGLVSLEPT-KVAEILKDRPSWYRDCRCVDILHVIPTGnggtiELIYMQV 274
                 68999*****************************************************.8888888888********************9999999999 PP

                 EXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHH CS
       START  96 aelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslvksglaega 193
                 + ++a+++l++ Rdf+++Ry+  l++g++v++   ++  ++      v  a+l + + l+++++++ s       v  ++++++++lr+l++s  + ++
  Do011906.1 275 SMTYAPTTLAApRDFWTLRYTSGLEDGSLVVMH--LCFVSYDV-VIYVGPAQLICERSLTQSTGGP-SGPNTPNFVRAEAWSVPEVLRPLYESPKILAQ 369
                 99******9999******************876..55555544.2334445555566666555544.66666777777788888888888888888888 PP

                 HHHHH CS
       START 194 ktwva 198
                 kt+ a
  Do011906.1 370 KTTIA 374
                 87765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.4352488IPR001356Homeobox domain
SMARTSM003892.6E-152692IPR001356Homeobox domain
SuperFamilySSF466895.99E-172891IPR009057Homeodomain-like
CDDcd000862.44E-162989No hitNo description
PfamPF000464.3E-163087IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.7E-183187IPR009057Homeodomain-like
CDDcd146861.54E-681120No hitNo description
PROSITE profilePS5084814.459167383IPR002913START domain
Gene3DG3DSA:3.30.530.201.4E-12175364IPR023393START-like domain
SMARTSM002342.5E-10176382IPR002913START domain
PfamPF018525.4E-24177374IPR002913START domain
SuperFamilySSF559617.55E-19177360No hitNo description
PfamPF086702.0E-50608750IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 751 aa     Download sequence    Send to blast
MAAAMVAAGC GKDRPSPGGG GAPQVDTGKY VRYTPEQVEA LERVYSECPK PSSLRRQQLI  60
RECPILSNIE PKQIKVWFQN RRCREKQRKE ASRLQTVNRK LTAMNKLLME ENDRLQKQVS  120
RLVYENGYMR QQLHNPSAAT TDTSCESVVT SGQHQQQNAA APRPQRDANN PAGLLAIAEE  180
TLAEFLSKAT GTAVDWVQMV GMKPGPDSIG IIAVSHNCSG VAARACGLVS LEPTKVAEIL  240
KDRPSWYRDC RCVDILHVIP TGNGGTIELI YMQVSMTYAP TTLAAPRDFW TLRYTSGLED  300
GSLVVMHLCF VSYDVVIYVG PAQLICERSL TQSTGGPSGP NTPNFVRAEA WSVPEVLRPL  360
YESPKILAQK TTIANVPPAL LVRFLREHRS EWADPGVDAY SAAALRASPY AVPGLRASGF  420
MGSQVILPLA HTLEHEEFLE VIRLEGHSLC HDEVVLSRDM YLLQLCSGVD ENAAGACAQL  480
VFAPIDESFA DDAPLLPSGF RVIPLDAKTD PPSGTRTLDL ASTLEVGSGG TTRASSDASS  540
ACNTRSVLTI AFQFSYENHL RESVAAMARQ YVRTVVASVQ RVAMAIAPSR LGGQLEMKQT  600
PGSPEAHTLA RWIGRSYRFH TGAELLRADT QCMDASLKAL WQHSDSIMCC SLKAAPVFTF  660
ANQAGLDMLE TTLIALQDIS LEKILDDDGR KALCTEYPKI MQQGFAYLPG GVCVSSMGRP  720
VSYEQAVAWK VLSDDDTPHC LAFMFVNWSF V
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo011906.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0668670.0BT066867.1 Zea mays full-length cDNA clone ZM_BFb0080J04 mRNA, complete cds.
GenBankBT0697240.0BT069724.1 Zea mays full-length cDNA clone ZM_BFb0226D15 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021891939.10.0homeobox-leucine zipper protein ATHB-15
SwissprotA2XK300.0HOX32_ORYSI; Homeobox-leucine zipper protein HOX32
TrEMBLA0A1E5VMG70.0A0A1E5VMG7_9POAL; Homeobox-leucine zipper protein HOX32
STRINGPavir.Ib04083.1.p0.0(Panicum virgatum)
STRINGGRMZM2G423337_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP3734923
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34710.10.0HD-ZIP family protein