PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do009515.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family ERF
Protein Properties Length: 383aa    MW: 40971.5 Da    PI: 4.3373
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do009515.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.42.1e-19131181155
         AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                 ++++GVr ++ +g+++AeIrd +     r  r++lg+f+taeeAak ++ a+ +l+g
  Do009515.1 131 PRFRGVRKRP-WGKYAAEIRDpW-----RrVRVWLGTFDTAEEAAKVYDSAAIQLRG 181
                 689*******.**********88.....55*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008479.5E-12131181IPR001471AP2/ERF domain
CDDcd000185.19E-29131191No hitNo description
SuperFamilySSF541712.09E-20132189IPR016177DNA-binding domain
SMARTSM003802.8E-34132195IPR001471AP2/ERF domain
PROSITE profilePS5103223.103132189IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.1E-29132190IPR001471AP2/ERF domain
PRINTSPR003675.4E-10133144IPR001471AP2/ERF domain
PRINTSPR003675.4E-10155171IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042991Biological Processtranscription factor import into nucleus
GO:0048366Biological Processleaf development
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 383 aa     Download sequence    Send to blast
MMWSMEEEMF VAVRRTEHVE VTSRAVVEAA PAAAKESAAV AGPRTVRVFC DDFDATDSSS  60
DEAEDDAVAR RRVKRYVQEI RLERAAKEMP AAKVAPSSAA ATAAAATGMK LVLPLPGRKR  120
KADGAGAGAE PRFRGVRKRP WGKYAAEIRD PWRRVRVWLG TFDTAEEAAK VYDSAAIQLR  180
GPDATTNFEQ VDGAAVPVEV AERVPQPPGA ATSKNASSSA TSYDSGEESH AAAASPTSVL  240
RTFPSAVAED TCSNKKPVPA PAPPALKPAP RAPETDESSV GGGSEFGCPF SYSDDCFGGE  300
FPPLYTDFDL LADFPEPSLD FLSDIPDEPV SLPSSFSTSN IGGESSSEPE LELELPSPAR  360
WQQVDDFFQD ITDLFQIDPL PVV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A9e-20124188571Ethylene-responsive transcription factor ERF096
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00456DAPTransfer from AT4G27950Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo009515.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9424212e-97EU942421.1 Zea mays clone 1496106 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004967470.11e-164ethylene-responsive transcription factor CRF1
TrEMBLA0A1E5VYG90.0A0A1E5VYG9_9POAL; Uncharacterized protein
STRINGPavir.Eb00092.1.p1e-150(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP16903697
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23750.22e-28cytokinin response factor 2