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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Do008777.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
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Family | CAMTA | ||||||||
Protein Properties | Length: 911aa MW: 102140 Da PI: 8.6906 | ||||||||
Description | CAMTA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CG-1 | 164.4 | 1.9e-51 | 33 | 147 | 4 | 117 |
CG-1 4 e.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrrcywl 101 e +rw +++ei+a+L+n++++++++++ ++p sg+++Ly+rk+vr+frkDG++wkkkkdgktv+E+hekLK+g+ e +++yYa++e++p+f rrcywl Do008777.1 33 EaGTRWFRPNEIYAVLANHARFRIHAQPIDKPMSGTVVLYDRKVVRNFRKDGHNWKKKKDGKTVQEAHEKLKIGNEEKVHVYYARGEDDPNFFRRCYWL 131 4379*********************************************************************************************** PP CG-1 102 Leeelekivlvhylev 117 L++ele+ivlvhy+++ Do008777.1 132 LDKELERIVLVHYRQT 147 *************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51437 | 72.789 | 27 | 153 | IPR005559 | CG-1 DNA-binding domain |
SMART | SM01076 | 8.2E-62 | 30 | 148 | IPR005559 | CG-1 DNA-binding domain |
Pfam | PF03859 | 2.6E-44 | 34 | 146 | IPR005559 | CG-1 DNA-binding domain |
SuperFamily | SSF81296 | 3.08E-10 | 378 | 464 | IPR014756 | Immunoglobulin E-set |
CDD | cd00204 | 1.25E-16 | 555 | 663 | No hit | No description |
SuperFamily | SSF48403 | 4.2E-17 | 561 | 669 | IPR020683 | Ankyrin repeat-containing domain |
Gene3D | G3DSA:1.25.40.20 | 4.5E-18 | 562 | 670 | IPR020683 | Ankyrin repeat-containing domain |
PROSITE profile | PS50297 | 18.484 | 571 | 675 | IPR020683 | Ankyrin repeat-containing domain |
Pfam | PF12796 | 3.4E-8 | 577 | 667 | IPR020683 | Ankyrin repeat-containing domain |
SMART | SM00248 | 6.7E-6 | 604 | 633 | IPR002110 | Ankyrin repeat |
PROSITE profile | PS50088 | 11.888 | 604 | 636 | IPR002110 | Ankyrin repeat |
SMART | SM00248 | 520 | 643 | 672 | IPR002110 | Ankyrin repeat |
SuperFamily | SSF52540 | 4.51E-9 | 756 | 820 | IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
SMART | SM00015 | 0.24 | 769 | 791 | IPR000048 | IQ motif, EF-hand binding site |
PROSITE profile | PS50096 | 8.334 | 770 | 799 | IPR000048 | IQ motif, EF-hand binding site |
Pfam | PF00612 | 0.0057 | 772 | 790 | IPR000048 | IQ motif, EF-hand binding site |
SMART | SM00015 | 0.004 | 792 | 814 | IPR000048 | IQ motif, EF-hand binding site |
PROSITE profile | PS50096 | 10.493 | 793 | 817 | IPR000048 | IQ motif, EF-hand binding site |
Pfam | PF00612 | 6.1E-4 | 794 | 814 | IPR000048 | IQ motif, EF-hand binding site |
SMART | SM00015 | 7.3 | 873 | 895 | IPR000048 | IQ motif, EF-hand binding site |
PROSITE profile | PS50096 | 9.249 | 875 | 903 | IPR000048 | IQ motif, EF-hand binding site |
Pfam | PF00612 | 0.12 | 876 | 895 | IPR000048 | IQ motif, EF-hand binding site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 911 aa Download sequence Send to blast |
MAAGAGSRDP LVASEIHGFL TCADLNYDKL MAEAGTRWFR PNEIYAVLAN HARFRIHAQP 60 IDKPMSGTVV LYDRKVVRNF RKDGHNWKKK KDGKTVQEAH EKLKIGNEEK VHVYYARGED 120 DPNFFRRCYW LLDKELERIV LVHYRQTSEE NAIPPPHIEA EVAEVPPINV IHYTSPQTST 180 DSASARTELS CAAAAPEEIN SHGGGAISCE TDDHDSSLES FWADLLESSM KNDTSVRGGS 240 LTPNQQTNNG MRDSGNNVFN TNATSNAIFS SPANVVSEAY ATNPGLNQVS ESYYGALKHL 300 VNQSPSLLTS DLDSQSKQLA SSLTKTPVNG SMPSDVPDRQ NSLGLWKYLD DDITCLGDNP 360 SSAIPTTRPM IDEIPFHIIE ISSEWAYCTE DTKVLVVGYF HDNYKHLAGT NLFCIIGDQC 420 VTADIVQTGV YRFMARPHVP GRVNLYLTLD GKTPISNVLS FDYREIPGSS DEDEPKKSKL 480 QMQMRLARLL FSTSKKKVAP KLLVEGSKVS NLLSASTDKE WMDLFKYVTD SKGTYIPATE 540 GLLELVLRNR LQEWLVEKII EGHKSTERDD LGQGPIHLCS FLGYTWAIRL FSLSGFSLDF 600 RDSSGWTALH WAASYGREKM VAALLSAGAN PSLVTDPTHD APGGHTAADL AARQGFDGLA 660 AYLAEKGLTA HFEAMSLSKD KRSASRTQSI KQLSKEFENL SEQELCLRES LAAYRNAADA 720 ASNIQAALRE RTLKLQTKAI QLANPELEAS AIVAAMRIQH AFRNYNRKKM MRAAARIQSH 780 FRTWQMRRNF MNMRRQAIKI QAVYRGHQVR RQYRKVIWSV GVVEKAILRW RKKRKGLRGI 840 ATGMPVAMAT DVEAASTAEE DYYQVGRQQA EDRFNRSVVR VQALFRSHRA QQEYRRMKVA 900 HEEAKVEFSQ K |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds calmodulin in a calcium-dependent manner in vitro. Binds to the DNA consensus sequence 5'-T[AC]CG[CT]GT[GT][GT][GT][GT]T[GT]CG-3'. {ECO:0000269|PubMed:16192280}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00435 | DAP | Transfer from AT4G16150 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Do008777.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT087910 | 0.0 | BT087910.1 Zea mays full-length cDNA clone ZM_BFb0305J11 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004957727.1 | 0.0 | calmodulin-binding transcription activator 6 | ||||
Swissprot | Q7XHR2 | 0.0 | CBT_ORYSJ; Calmodulin-binding transcription activator CBT | ||||
TrEMBL | A0A1E5V8U6 | 0.0 | A0A1E5V8U6_9POAL; Calmodulin-binding transcription activator 5 | ||||
STRING | Si028862m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP9831 | 29 | 33 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G16940.1 | 0.0 | calmodulin binding;transcription regulators |