PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do007600.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family Trihelix
Protein Properties Length: 359aa    MW: 39012.3 Da    PI: 7.9384
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do007600.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix63.83.8e-2039108271
    trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr 71 
                 Wt  e+++Liea+r+++e+   g +  ++W++v +++++ g++rs++qC+++w+nl ++ykk++++e  +
  Do007600.1  39 WTLPETMLLIEAKRKVHEERHPGDQGLARWRWVEDYCWRAGCRRSQNQCNDRWDNLMRDYKKVRAHELAG 108
                 *****************************************************************99776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500908.063195IPR017877Myb-like domain
SuperFamilySSF466899.4E-73497IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.1E-53497IPR009057Homeodomain-like
PfamPF138374.8E-1437107No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MEGGSRALLG QARDEQSRNV AVASAGALTV ARDYRRGNWT LPETMLLIEA KRKVHEERHP  60
GDQGLARWRW VEDYCWRAGC RRSQNQCNDR WDNLMRDYKK VRAHELAGAG AGRAPSYWAM  120
GRAERKGRGL PSNLLREIYD AMGEVIDRRM SMGCGGSGGG GGAGGAFVGA SSSLLDVPMQ  180
ASPLAQVLPR PLPLEQETPH HGHGAAHFGF ESPERKRRRP SLDELRPGSS TPSSAPGTHG  240
HRQEQGHHHR EDEYDHGDDD ESSGSEYSDD DGEVLSGAIG RCAAILSEAL ESREAAEERR  300
HREVMAVEER RGRARRARRE AGEQCVAGLA AAVNQLAGSM LALAAAKHKD KGGGPAAPK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1214218RKRRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo007600.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025792444.10.0uncharacterized protein LOC112873645
TrEMBLA0A1E5W5520.0A0A1E5W552_9POAL; Uncharacterized protein
STRINGPavir.J22454.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP32943571
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G31310.13e-42Trihelix family protein