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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Do004760.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
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Family | MYB | ||||||||
Protein Properties | Length: 354aa MW: 37696.8 Da PI: 6.6156 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 53.7 | 4.6e-17 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg W++eEde+l + ++++G g+W+++++ g+ R++k+c++rw +yl Do004760.1 14 RGLWSPEEDEKLMNHIAKYGHGCWSSVPKLAGLERCGKSCRLRWINYL 61 788*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 53.5 | 5.7e-17 | 67 | 111 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg++++eE++l+++++ +lG++ W+ Ia+ ++ gRt++++k++w++y Do004760.1 67 RGAFSQEEEDLIIHLHSMLGNK-WSQIAAQLP-GRTDNEVKNFWNSY 111 89********************.*********.************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.2E-25 | 9 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 19.139 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 5.24E-30 | 12 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.1E-13 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.4E-15 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.46E-12 | 17 | 61 | No hit | No description |
PROSITE profile | PS51294 | 27.138 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.3E-26 | 65 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 6.4E-16 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.9E-16 | 67 | 111 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.09E-11 | 69 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 354 aa Download sequence Send to blast |
MARRTSGPKK KLRRGLWSPE EDEKLMNHIA KYGHGCWSSV PKLAGLERCG KSCRLRWINY 60 LRPDLKRGAF SQEEEDLIIH LHSMLGNKWS QIAAQLPGRT DNEVKNFWNS YIKKKLRQRG 120 IDPATHKLLA EASSSRGGAA AASSRTAVFS DAELILSSAA GQHMPPPPVT AESYVYSLSI 180 SADGGASDGS LQSLSGYNQT GDFAAGYLQD PDVLHCGPSG VPAVVLPSVS SSSTLNSMAD 240 LSPAATTATT GTDEQCNNNS SSGGGNGPFK PSTQQSCSAN QLPPWLELGT SGYANGAAAV 300 DQYGAALDEL KWSDYVFDGY GGGQYQQGQC IYGDSKDAVQ FVDANGLSSS WCLN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-29 | 12 | 116 | 5 | 108 | B-MYB |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Do004760.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ477331 | 1e-161 | KJ477331.1 Indosasa hispida MYB transcription factor mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025802131.1 | 0.0 | transcription factor MYB61-like | ||||
TrEMBL | A0A1E5UXC1 | 0.0 | A0A1E5UXC1_9POAL; Transcription factor MYB86 | ||||
STRING | Si029872m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3092 | 33 | 85 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G01680.3 | 6e-75 | myb domain protein 55 |