PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do004345.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family ARR-B
Protein Properties Length: 728aa    MW: 81884.8 Da    PI: 5.9263
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do004345.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like48.22.5e-15166216455
     G2-like   4 lrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                 ++W++ L  +F++a+e L G e   P++i  lm+v+g+ ++hv+SHLQkYR 
  Do004345.1 166 ICWNEYLQGKFLRALEIL-GDEDLSPRNIEILMNVEGVNRKHVASHLQKYRK 216
                 79****************.8999****************************5 PP
2G2-like46.11.1e-14520570355
     G2-like   3 rlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                 +l Wtp L ++F++a e LG  e AtPk i   m+v+++ ++++  HLQkYR 
  Do004345.1 520 QLMWTPSLERKFLQARELLG--EAATPKMIQLSMNVNSIGRTQISAHLQKYRK 570
                 799****************4..67****************************6 PP
3Response_reg28.38.8e-11161191105
                   EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHH.HHHTTTSEEEEEESTTTHHHHHHHHHTTE CS
  Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkei.reeepklpiivvtahgeeedalealkaGa 94 
                   v++vd+++  ++  r++l  ++y ++++ +++ +al+ll+ +   +D+ l+ + m +m+G+++l  +   +e      v++ + +++ + +++k+Ga
    Do004345.1  16 VIVVDEDEHHANSARSMLCAHDY-RATAYTSPLQALDLLEGHAqeVDVALVALHMEEMHGFQFLDMLiICAE---FGTVMSEETTMDIIGRCVKLGA 108
                   799********************.***************777667********************9974444...3468999*************** PP

                   SEEEESS--HH CS
  Response_reg  95 kdflsKpfdpe 105
                   +  + Kp+d  
    Do004345.1 109 RFLVGKPIDTH 119
                   *******9865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521728.82E-1512128IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23005.7E-1413135No hitNo description
SMARTSM004487.7E-414125IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011018.55615129IPR001789Signal transduction response regulator, receiver domain
PfamPF000722.1E-816120IPR001789Signal transduction response regulator, receiver domain
CDDcd001561.33E-817117No hitNo description
Gene3DG3DSA:1.10.10.601.6E-15160217IPR009057Homeodomain-like
SuperFamilySSF466891.16E-10161219IPR009057Homeodomain-like
TIGRFAMsTIGR015577.8E-15163217IPR006447Myb domain, plants
Gene3DG3DSA:3.40.50.23001.2E-11382498No hitNo description
SuperFamilySSF521725.15E-5386413IPR011006CheY-like superfamily
SuperFamilySSF521725.15E-5442499IPR011006CheY-like superfamily
Gene3DG3DSA:1.10.10.601.0E-13515574IPR009057Homeodomain-like
SuperFamilySSF466892.06E-8517574IPR009057Homeodomain-like
TIGRFAMsTIGR015574.7E-14520571IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0009736Biological Processcytokinin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 728 aa     Download sequence    Send to blast
MGERAMVCPT DDGLRVIVVD EDEHHANSAR SMLCAHDYRA TAYTSPLQAL DLLEGHAQEV  60
DVALVALHME EMHGFQFLDM LIICAEFGTV MSEETTMDII GRCVKLGARF LVGKPIDTHT  120
VQNLWQHLEL EDSRRMHHIK QLLQGNGEAH DMSYMKESTK TKKSYICWNE YLQGKFLRAL  180
EILGDEDLSP RNIEILMNVE GVNRKHVASH LQKYRKRMEA GKQNSALDAM KCGKRASTSK  240
SAKSHQEDTN TSLSSPDIQQ EEITADEDVP HAQTGSFSDD NVHAAMRRSI QFGTIYDESQ  300
YFDFSYGDGV DMMEHGAAQD DGKSASGFRA QIWAGTGGQD GRLWQLRGEE RKHQMRGRQG  360
DGRSEWQRKG ERDQSLKHMG TQRSDRRLSV LVVDDNLSDA NIASCMLAKL NFQASRNLSF  420
ERSFPTVLCL KKIINVSLVF LVTVYTSSVE ALKFLKDHEK DIDFALVAVN MKEMHGFQFL  480
DISKRSHKNL QVISIEGKSD HIFKSENKFG EFTNKQKATQ LMWTPSLERK FLQARELLGE  540
AATPKMIQLS MNVNSIGRTQ ISAHLQKYRK KVKKELRNTN AKKCSNGASS SKPLQICETG  600
PNTCQYDPEI QPADTSDEDM SWDQTESTEA TRRALQLGTV FDESQLPNDP SGRQASKGEV  660
DMMGDDNCPN DWTYAFGDKN VVSETHNADN GKGVMDQGDS DKQVSNCDAQ ARVVKLVTYS  720
DSEDDEAL
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo004345.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025825246.11e-121two-component response regulator ORR29-like
TrEMBLA0A1E5UV520.0A0A1E5UV52_9POAL; Two-component response regulator ORR29
STRINGSi012772m1e-125(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP59202345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16110.14e-20response regulator 2