PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Do003788.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
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Family | C2H2 | ||||||||
Protein Properties | Length: 410aa MW: 44023.9 Da PI: 6.9155 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 15.9 | 3.7e-05 | 237 | 256 | 1 | 20 |
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++Cp C k+F+r n++ H+ Do003788.1 237 FSCPVCFKTFNRYNNMQMHM 256 89*****************9 PP | |||||||
2 | zf-C2H2 | 11 | 0.0013 | 323 | 343 | 3 | 23 |
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C Cgk F k + ++H +++ Do003788.1 323 CRRCGKAFAVKGDWRTHEKNC 343 *****************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 6.1E-6 | 237 | 256 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 9.64 | 237 | 264 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 239 | 259 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 3.19E-6 | 303 | 341 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 3.5E-5 | 308 | 341 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 8.538 | 321 | 341 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 410 aa Download sequence Send to blast |
MENPYTSFIR SYPHHHRYYY QHPAAPPAPA APSAAYSSLP FFAGHLQPPA QTTPPAPPSP 60 PLREALPLLS LAPAASRGVM REPVQRVRSA ADSDEDGDEE EEEEEGPAAT SNNHHGQQRV 120 GGLFADLNAK AVGDPMDVEA GAGSGPAAGD VTVALRIGLP TTSAGAADLG THRRRQDDGA 180 EEGSNDRENG SGGEEEEEEG EAVAAPLGFP STPIGRLNKG QYWIPTPSQI LIGPTQFSCP 240 VCFKTFNRYN NMQMHMWGHG SQYRKGPESL RGIQPTAMLR LPCYCCAPGC RNNIDHPRAK 300 PLKDFRTLQT HYKRKHGLKP FLCRRCGKAF AVKGDWRTHE KNCGRLWYCL CGSEFKHKRS 360 LKDHARAFGH GHGFGGGGAG AGCGGGLDDD DDGAVSDVEH DGGGAAARSM |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269|PubMed:17600712, ECO:0000269|PubMed:23515580, ECO:0000269|PubMed:25039392}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Do003788.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU969661 | 0.0 | EU969661.1 Zea mays clone 333696 zinc finger protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004957169.1 | 0.0 | zinc finger protein WIP2 | ||||
Swissprot | Q9SVY1 | 1e-118 | ZWIP2_ARATH; Zinc finger protein WIP2 | ||||
TrEMBL | A0A1E5UVN9 | 0.0 | A0A1E5UVN9_9POAL; Zinc finger protein WIP2 | ||||
STRING | Si029897m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP586 | 38 | 170 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G57670.1 | 1e-106 | C2H2 family protein |
Publications ? help Back to Top | |||
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