PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do003592.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family MIKC_MADS
Protein Properties Length: 532aa    MW: 61148.1 Da    PI: 9.4517
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do003592.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF86.31.8e-271059251
                ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
      SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                rienk+ rqvtf+kRrng+lKKA+ELS+LCdaeva+++fs+ g+ly +ss
  Do003592.1 10 RIENKISRQVTFAKRRNGLLKKAYELSILCDAEVALVLFSHAGRLYQFSS 59
                9***********************************************96 PP
2SRF-TF953.4e-30296346151
                 S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
      SRF-TF   1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 
                 krienk+nrqvtfskRr g+lKKA+E+SvLCdaeva+iifs++gklyey++
  Do003592.1 296 KRIENKINRQVTFSKRRSGLLKKANEISVLCDAEVALIIFSTKGKLYEYAT 346
                 79***********************************************86 PP
3K-box95.49.2e-32831749100
       K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                  ++ ++++ +qe+ kLk ++e Lq++qR+llGedL +Ls  eL+qLe+q++k lk+iRs+K+++ll+++ +l++ke++lq++n+ L++kl+e
  Do003592.1  83 PSSDEMQQNYQEYVKLKTRVEVLQHSQRNLLGEDLAPLSTSELEQLESQVDKTLKQIRSRKTQVLLDELCDLKRKEQMLQDANRVLKRKLDE 174
                 56778999*********************************************************************************986 PP
4K-box102.17.4e-34366460599
       K-box   5 sgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                    s+e++ + ++++e++kLk+++e++q+ q+hl+GedLe+L++keLqqLeqqLe+slk+iR +K++l++e+i+elq+kek+lqeenk L+++l 
  Do003592.1 366 VLISAESESQVNWCHEYRKLKAKVETIQKCQKHLMGEDLETLNIKELQQLEQQLESSLKHIRCRKSQLMMESISELQRKEKSLQEENKVLQEELT 460
                 55667788899********************************************************************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.9E-36160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006631.02161IPR002100Transcription factor, MADS-box
CDDcd002652.95E-37279No hitNo description
SuperFamilySSF554551.44E-29283IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003193.5E-251057IPR002100Transcription factor, MADS-box
PfamPF014861.1E-2785172IPR002487Transcription factor, K-box
PROSITE profilePS5129715.26688178IPR002487Transcription factor, K-box
PROSITE profilePS5006632.941288348IPR002100Transcription factor, MADS-box
SMARTSM004322.3E-40288347IPR002100Transcription factor, MADS-box
CDDcd002651.07E-39289360No hitNo description
SuperFamilySSF554551.11E-33289378IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-30290310IPR002100Transcription factor, MADS-box
PROSITE patternPS003500290344IPR002100Transcription factor, MADS-box
PfamPF003195.1E-25297344IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-30310325IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-30325346IPR002100Transcription factor, MADS-box
PfamPF014865.9E-29371459IPR002487Transcription factor, K-box
PROSITE profilePS5129717.563375465IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009933Biological Processmeristem structural organization
GO:0010076Biological Processmaintenance of floral meristem identity
GO:0010582Biological Processfloral meristem determinacy
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 532 aa     Download sequence    Send to blast
MGRGKVVLQR IENKISRQVT FAKRRNGLLK KAYELSILCD AEVALVLFSH AGRLYQFSSS  60
SNLLKTLERY QRYIYASADA AVPSSDEMQQ NYQEYVKLKT RVEVLQHSQR NLLGEDLAPL  120
STSELEQLES QVDKTLKQIR SRKTQVLLDE LCDLKRKEQM LQDANRVLKR KLDEVEAEAA  180
PPQQLPWQDV SGDAMLSDGP PQPEHFFQAL ESNLSLQPTY FPLPFIYRLN KFVFLCIKTV  240
LNPALPFMQI PYHGHEPAAG ACVDGIAASS SFHCPEKKRR RRRRPAAMGR GKVQLKRIEN  300
KINRQVTFSK RRSGLLKKAN EISVLCDAEV ALIIFSTKGK LYEYATDSCM DKILERYERY  360
YYAEKVLISA ESESQVNWCH EYRKLKAKVE TIQKCQKHLM GEDLETLNIK ELQQLEQQLE  420
SSLKHIRCRK SQLMMESISE LQRKEKSLQE ENKVLQEELT EKQKAQRQQA QWEQTQQQTS  480
SSSSSFMMRE APLATNISSY PVAAGGDRVE RAAAQPQIRT GLPPWMLSHL SS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ox0_A5e-24754611103Developmental protein SEPALLATA 3
4ox0_B5e-24754611103Developmental protein SEPALLATA 3
4ox0_C5e-24754611103Developmental protein SEPALLATA 3
4ox0_D5e-24754611103Developmental protein SEPALLATA 3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1275284EKKRRRRRRP
2277282KRRRRR
3277283KRRRRRR
4278283RRRRRR
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. May be involved in the control of flowering time. {ECO:0000269|Ref.9}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00096ChIP-seqTransfer from AT1G69120Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo003592.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ4306410.0AJ430641.1 Zea mays mRNA for putative MADS-domain transcription factor (m4 gene).
GenBankBT0856810.0BT085681.1 Zea mays full-length cDNA clone ZM_BFc0047E01 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004981740.11e-139MADS-box transcription factor 14 isoform X1
SwissprotQ10CQ11e-127MAD14_ORYSJ; MADS-box transcription factor 14
TrEMBLA0A0E0D6X60.0A0A0E0D6X6_9ORYZ; Uncharacterized protein
STRINGLPERR03G28970.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP136182630
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02310.12e-73MIKC_MADS family protein
Publications ? help Back to Top
  1. Jia H, et al.
    Characterization and transcriptional profiles of two rice MADS-box genes.
    Plant Sci., 2000. 155(2): p. 115-122
    [PMID:10814814]
  2. Jang S,An K,Lee S,An G
    Characterization of tobacco MADS-box genes involved in floral initiation.
    Plant Cell Physiol., 2002. 43(2): p. 230-8
    [PMID:11867703]
  3. Kim SL,Lee S,Kim HJ,Nam HG,An G
    OsMADS51 is a short-day flowering promoter that functions upstream of Ehd1, OsMADS14, and Hd3a.
    Plant Physiol., 2007. 145(4): p. 1484-94
    [PMID:17951465]
  4. Li D, et al.
    Functional characterization of rice OsDof12.
    Planta, 2009. 229(6): p. 1159-69
    [PMID:19198875]
  5. Tanaka N, et al.
    The COP1 ortholog PPS regulates the juvenile-adult and vegetative-reproductive phase changes in rice.
    Plant Cell, 2011. 23(6): p. 2143-54
    [PMID:21705640]
  6. Kobayashi K, et al.
    Inflorescence meristem identity in rice is specified by overlapping functions of three AP1/FUL-like MADS box genes and PAP2, a SEPALLATA MADS box gene.
    Plant Cell, 2012. 24(5): p. 1848-59
    [PMID:22570445]
  7. Wei X, et al.
    Fine mapping of BH1, a gene controlling lemma and palea development in rice.
    Plant Cell Rep., 2013. 32(9): p. 1455-63
    [PMID:23689259]
  8. Su L,Shan JX,Gao JP,Lin HX
    OsHAL3, a Blue Light-Responsive Protein, Interacts with the Floral Regulator Hd1 to Activate Flowering in Rice.
    Mol Plant, 2016. 9(2): p. 233-244
    [PMID:26537047]
  9. Wu F, et al.
    The ABCs of flower development: mutational analysis of AP1/FUL-like genes in rice provides evidence for a homeotic (A)-function in grasses.
    Plant J., 2017. 89(2): p. 310-324
    [PMID:27689766]