PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do001525.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family bHLH
Protein Properties Length: 381aa    MW: 39325.9 Da    PI: 5.3964
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do001525.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.61.1e-08340376344
                 HHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHH CS
         HLH   3 rahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiL 44 
                 ++h e+Er RRd++N +f  Lr  +P+ +      K + a+ L
  Do001525.1 340 MSHVEAERSRRDKLNRRFCDLRAAVPTmS------KTDRASLL 376
                 589************************44......55555555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.5337381IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.71E-9338380IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.11E-7340380No hitNo description
PfamPF000103.7E-6341379IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.3E-8341380IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 381 aa     Download sequence    Send to blast
MVGRQAAAVR LTTATARHAP ARLMGALRSL DLPVQHACVT RVQGLTVQDV VVDVPAXRWT  60
CRSSTRAQAT GEQLGSSISR GSGSSIVMDR LRSFSIFSVH PVAGGVTGTP IDDDGTIAAA  120
SGSHFYSYGT REAEEAATVL VLAPEQPNRG SQAVAATTGG TATSSAAPPG APSVMAPAEE  180
DHAAPAPAPE DEEDKAATEA EAEQGESISL DEAYALAQRL RAQEPLGGIA FAAGSATANS  240
TTPANTSSAR TREESPAHSP ASSFSLAAGG GHHHHHPVLE FESCDVPELW LEDDDGLDGA  300
AWGDGSSPSA GNNLSDDKSP APAAKRRGRN PGPKTQGPAM SHVEAERSRR DKLNRRFCDL  360
RAAVPTMSKT DRASLLADAT A
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo001525.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A1E5W1X40.0A0A1E5W1X4_9POAL; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP89333130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16430.13e-14bHLH family protein