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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Dca57583.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
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Family | ERF | ||||||||
Protein Properties | Length: 246aa MW: 26917.9 Da PI: 7.9778 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 62.2 | 1.1e-19 | 6 | 57 | 1 | 56 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkklege 56 ++++GVr++ +g+Wv+eIr+p kr++lg+f taeeAa+a+++a+ ++g+ Dca57583.1 6 KKFRGVRQRQ-WGSWVSEIRHP-----LlkKRVWLGTFETAEEAARAYDQAAILMNGH 57 59*****999.**********8.....335**********************998876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 3.89E-33 | 6 | 64 | No hit | No description |
SuperFamily | SSF54171 | 1.05E-20 | 7 | 65 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 1.6E-12 | 7 | 57 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 8.7E-33 | 7 | 65 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 21.97 | 7 | 64 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.2E-37 | 7 | 70 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 9.8E-11 | 8 | 19 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 9.8E-11 | 30 | 46 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS50835 | 7.232 | 92 | 215 | IPR007110 | Immunoglobulin-like domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 246 aa Download sequence Send to blast |
MVLPSKKFRG VRQRQWGSWV SEIRHPLLKK RVWLGTFETA EEAARAYDQA AILMNGHNAK 60 TNFPKDHSTT INNSTSNANN DTIHNLKTNL VPKMAPFDTT LSEILSAKLK KYCKDPSPSL 120 TCLRLDTDNS HIGVWQKRAG SCSGSSWVMR VELGKSSNII KEDNNSNNNT TLVNNNNNNS 180 DEASLLSPTS LPSSSSKYSC SSSSSSSSSS SSSISNFGAE LSEEDEAAAL QMIEELLNWN 240 SPSIAI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 4e-18 | 6 | 64 | 1 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Promotes cuticle formation by inducing the expression of enzymes involved in wax biosynthesis (PubMed:15070782, PubMed:15319479). Confers drought resistance (PubMed:15319479). Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:15070782, ECO:0000269|PubMed:15319479}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010696316.1 | 1e-99 | PREDICTED: ethylene-responsive transcription factor WIN1 | ||||
Swissprot | Q9XI33 | 1e-65 | WIN1_ARATH; Ethylene-responsive transcription factor WIN1 | ||||
TrEMBL | A0A0K9Q9V0 | 7e-89 | A0A0K9Q9V0_SPIOL; Uncharacterized protein (Fragment) | ||||
STRING | XP_010696316.1 | 4e-99 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G11190.1 | 2e-55 | ERF family protein |