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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
Dca52486.1 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
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| Family |
LSD |
| Protein Properties |
Length: 177aa MW: 18645.5 Da PI: 8.3752 |
| Description |
LSD family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Dca52486.1 | genome | DCA | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-LSD1 | 49.2 | 8.3e-16 | 7 | 31 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25
C+gCrt+L YPrGAp+VRCa+C+tV
Dca52486.1 7 CNGCRTILLYPRGAPNVRCAVCNTV 31
************************9 PP
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| 2 | zf-LSD1 | 38.9 | 1.5e-12 | 46 | 70 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25
Cg C+tlL+Y+rGA+sVRC +C+tV
Dca52486.1 46 CGRCHTLLMYTRGATSVRCLCCHTV 70
************************9 PP
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| 3 | zf-LSD1 | 43.8 | 4.1e-14 | 89 | 112 | 1 | 24 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdt 24
Cg+C+ +L+YP GApsV+Ca+C+
Dca52486.1 89 CGSCQMTLMYPSGAPSVKCAVCQY 112
**********************96 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0000303 | Biological Process | response to superoxide |
| GO:0001666 | Biological Process | response to hypoxia |
| GO:0002240 | Biological Process | response to molecule of oomycetes origin |
| GO:0009626 | Biological Process | plant-type hypersensitive response |
| GO:0009862 | Biological Process | systemic acquired resistance, salicylic acid mediated signaling pathway |
| GO:0010104 | Biological Process | regulation of ethylene-activated signaling pathway |
| GO:0010310 | Biological Process | regulation of hydrogen peroxide metabolic process |
| GO:0010602 | Biological Process | regulation of 1-aminocyclopropane-1-carboxylate metabolic process |
| GO:0010618 | Biological Process | aerenchyma formation |
| GO:0043069 | Biological Process | negative regulation of programmed cell death |
| Sequence ? help Back to Top |
| Protein Sequence Length: 177 aa
Download sequence Send
to blast |
MQSQLVCNGC RTILLYPRGA PNVRCAVCNT VSPVQPTGLD MDQIICGRCH TLLMYTRGAT 60
SVRCLCCHTV NLTNANLSSA PNQIATVRCG SCQMTLMYPS GAPSVKCAVC QYITNVATAN 120
GGAPNLIGMS NGVDNTSSST AIPDSHSQTV VVENPMSFDR SGKLVSNLVV GVTKEKK
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| Functional Description ? help
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| Source |
Description |
| UniProt | Negative regulator of reactive oxygen-induced cell death, cold stress-induced cell death, pathogen-induced hypersensitive response (HR), basal disease resistance. May be involved in the induction of the copper/zinc superoxide dismutase CSD1 and CSD2 that detoxify accumulating superoxide before the reactive oxygen species (ROS) can trigger a cell death cascade. LSD1 and LOL1 have antagonistic effects on CSD1 and CSD2 accumulation to regulate oxidative stress-induced cell death. Antagonizes the function of BZIP10, a positive regulator of cell death, by interacting in the cytoplasm and preventing its nuclear localization. Controls lysigenous aerenchyma in hypocotyls under root hypoxia. Required for leaf acclimation in response to excess excitation energy. {ECO:0000269|PubMed:10550898, ECO:0000269|PubMed:11595797, ECO:0000269|PubMed:11844114, ECO:0000269|PubMed:12732715, ECO:0000269|PubMed:15347794, ECO:0000269|PubMed:16957775, ECO:0000269|PubMed:18055613, ECO:0000269|PubMed:18790826, ECO:0000269|PubMed:20456049, ECO:0000269|PubMed:21097903}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: By methyl viologen. {ECO:0000269|PubMed:20456049}. |
| Publications
? help Back to Top |
- Spedaletti V, et al.
Characterization of a lysine-specific histone demethylase from Arabidopsis thaliana.
Biochemistry, 2008. 47(17): p. 4936-47
[PMID:18393445] - Szechyńska-Hebda M,Czarnocka W,Hebda M,Bernacki MJ,Karpiński S
PAD4, LSD1 and EDS1 regulate drought tolerance, plant biomass production, and cell wall properties.
Plant Cell Rep., 2016. 35(3): p. 527-39
[PMID:26754794] - Czarnocka W, et al.
The dual role of LESION SIMULATING DISEASE 1 as a condition-dependent scaffold protein and transcription regulator.
Plant Cell Environ., 2017. 40(11): p. 2644-2662
[PMID:28555890] - Bernacki MJ, et al.
LSD1-, EDS1- and PAD4-dependent conditional correlation among salicylic acid, hydrogen peroxide, water use efficiency and seed yield in Arabidopsis thaliana.
Physiol Plant, 2019. 165(2): p. 369-382
[PMID:30461017]
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