PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dca49164.1

Organism

Dianthus caryophyllus

Taxonomic ID

3570

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus

Family

CAMTA

Protein Properties

Length: 869aa MW: 98734.8 Da PI: 8.6355

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dca49164.1	genome	DCA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	149.8	6.8e-47	30	137	3	109
CG-1 3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrrcyw 100 +e k+rwl+++ei+aiL n++ +++ ++ + pk g++iL++rkk+r+frkDG++w+kkkdgktv+E+he+LKvg+ e +++yYah+e+nptf rrcyw Dca49164.1 30 NEaKSRWLRPNEIHAILSNYTYFTINVKPVNLPKGGKIILFDRKKIRNFRKDGHNWRKKKDGKTVKEAHEHLKVGTEERIHVYYAHGEDNPTFVRRCYW 128 5559********************************************************************************************* PP CG-1 101 lLeeeleki 109 lL++ ++ Dca49164.1 129 LLDKYVSRA 137 *986665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51437	64.872	25	155	IPR005559	CG-1 DNA-binding domain
SMART	SM01076	2.9E-60	28	160	IPR005559	CG-1 DNA-binding domain
Pfam	PF03859	1.8E-39	31	133	IPR005559	CG-1 DNA-binding domain
SuperFamily	SSF81296	3.64E-10	322	408	IPR014756	Immunoglobulin E-set
CDD	cd00204	9.58E-16	505	615	No hit	No description
Gene3D	G3DSA:1.25.40.20	8.4E-17	505	618	IPR020683	Ankyrin repeat-containing domain
SuperFamily	SSF48403	6.68E-17	506	619	IPR020683	Ankyrin repeat-containing domain
PROSITE profile	PS50297	15.486	514	615	IPR020683	Ankyrin repeat-containing domain
Pfam	PF12796	2.0E-6	546	619	IPR020683	Ankyrin repeat-containing domain
SMART	SM00248	4.2E-5	556	585	IPR002110	Ankyrin repeat
PROSITE profile	PS50088	11.514	556	588	IPR002110	Ankyrin repeat
SMART	SM00248	3200	595	626	IPR002110	Ankyrin repeat
SuperFamily	SSF52540	3.19E-7	662	768	IPR027417	P-loop containing nucleoside triphosphate hydrolase
SMART	SM00015	18	717	739	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	7.126	718	747	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	0.0012	740	762	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	9.688	741	765	IPR000048	IQ motif, EF-hand binding site
Pfam	PF00612	2.7E-4	742	762	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	7.8	821	843	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	8.572	823	851	IPR000048	IQ motif, EF-hand binding site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 869 aa Download sequence Send to blast
MENYSSGRLL ASDVHGFHTM EDLDIPTIMN EAKSRWLRPN EIHAILSNYT YFTINVKPVN 60 LPKGGKIILF DRKKIRNFRK DGHNWRKKKD GKTVKEAHEH LKVGTEERIH VYYAHGEDNP 120 TFVRRCYWLL DKYVSRAYCA CALPRYSRGS GDSVNVTNYQ MRLHEINTLD WDELLASNDP 180 IESLLTTKDS APTAQQYQQN AAYNLENNGN GIIINQSQAT ILAPRNDRDP VEGSNFAGIS 240 PLNDRLLSSV DNLIAQNGDP LQKGGLQSQD SFGRWISDII VDSPVSADDP SFESSGVSGH 300 GTFMSSAAVN HEGSVPLQIF CITDISQSWA SSVEDTKILV VGYFHQEYQH VAKSNIFCVC 360 GDICVSAEVV QVGVFRCLVP PQSPGLTNLY LSIDCCTPIS QVLTFEFRSP VYNNVTVKED 420 KAQWDMFRIQ TRLSHLLFST SKSLDILSSK VSPNALKEGK KFALKYSNIA DSWSYFNRLM 480 EDGRISFERA KDSLFELAMK SRLKEWLLER VIDGSKVAER DARGQGVLHL CAILDYTWAV 540 YPYSSCGMSL DFRDKFGWTA LHWAAYYGRE RMVAALLSAG AKANLVSDPT SENPGGCTPA 600 DLAYNQGYEG VAAYLSEKAL IQQFDDMKTA GNVSGFLGTP SEIKPSNISE DELYLKETLT 660 AYRTAADAAA RIQVAFRERS LKQRAKDVEG NNSEAEARYI VSALRIQHAY RNYESRKKMA 720 AAAHIQHRFR AWKLRREFLN MRRQAIKIQA VFRGFQVRKQ YRKICWSVGV LEKAILRWRL 780 KRKGLRGLEV QIKEPPIEDR SPESDNEEDF YRASRKQAEV RVEKAVVRVQ AMFRSRQAQQ 840 EYRRMKLAHA QAQQEFEETT IPYAYMDHI

Sequence ? help Back to Top

Protein Sequence Length: 869 aa Download sequence Send to blast

MENYSSGRLL ASDVHGFHTM EDLDIPTIMN EAKSRWLRPN EIHAILSNYT YFTINVKPVN  60
LPKGGKIILF DRKKIRNFRK DGHNWRKKKD GKTVKEAHEH LKVGTEERIH VYYAHGEDNP  120
TFVRRCYWLL DKYVSRAYCA CALPRYSRGS GDSVNVTNYQ MRLHEINTLD WDELLASNDP  180
IESLLTTKDS APTAQQYQQN AAYNLENNGN GIIINQSQAT ILAPRNDRDP VEGSNFAGIS  240
PLNDRLLSSV DNLIAQNGDP LQKGGLQSQD SFGRWISDII VDSPVSADDP SFESSGVSGH  300
GTFMSSAAVN HEGSVPLQIF CITDISQSWA SSVEDTKILV VGYFHQEYQH VAKSNIFCVC  360
GDICVSAEVV QVGVFRCLVP PQSPGLTNLY LSIDCCTPIS QVLTFEFRSP VYNNVTVKED  420
KAQWDMFRIQ TRLSHLLFST SKSLDILSSK VSPNALKEGK KFALKYSNIA DSWSYFNRLM  480
EDGRISFERA KDSLFELAMK SRLKEWLLER VIDGSKVAER DARGQGVLHL CAILDYTWAV  540
YPYSSCGMSL DFRDKFGWTA LHWAAYYGRE RMVAALLSAG AKANLVSDPT SENPGGCTPA  600
DLAYNQGYEG VAAYLSEKAL IQQFDDMKTA GNVSGFLGTP SEIKPSNISE DELYLKETLT  660
AYRTAADAAA RIQVAFRERS LKQRAKDVEG NNSEAEARYI VSALRIQHAY RNYESRKKMA  720
AAAHIQHRFR AWKLRREFLN MRRQAIKIQA VFRGFQVRKQ YRKICWSVGV LEKAILRWRL  780
KRKGLRGLEV QIKEPPIEDR SPESDNEEDF YRASRKQAEV RVEKAVVRVQ AMFRSRQAQQ  840
EYRRMKLAHA QAQQEFEETT IPYAYMDHI

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	71	88	RKKIRNFRKDGHNWRKKK

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator (PubMed:14581622). Binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved in response to cold. Contributes together with CAMTA3 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:28351986). {ECO:0000250\|UniProtKB:Q8GSA7, ECO:0000269\|PubMed:14581622, ECO:0000269\|PubMed:28351986, ECO:0000305\|PubMed:11925432}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00435	DAP	Transfer from AT4G16150	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By heat shock, UVB, wounding, abscisic acid, H(2)O(2) and salicylic acid. {ECO:0000269\|PubMed:12218065}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021730252.1	0.0	calmodulin-binding transcription activator 5-like isoform X1
Swissprot	O23463	0.0	CMTA5_ARATH; Calmodulin-binding transcription activator 5
TrEMBL	A0A0K9QKS6	0.0	A0A0K9QKS6_SPIOL; Uncharacterized protein
STRING	XP_010671665.1	0.0	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G16150.1	0.0	calmodulin binding;transcription regulators

Publications ? help Back to Top
Ye J, et al. Arabidopsis formin3 directs the formation of actin cables and polarized growth in pollen tubes. Plant Cell, 2009. 21(12): p. 3868-84 [PMID:20023198] Kidokoro S, et al. Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature. Plant Cell, 2017. 29(4): p. 760-774 [PMID:28351986] Lan Y,Liu X,Fu Y,Huang S Arabidopsis class I formins control membrane-originated actin polymerization at pollen tube tips. PLoS Genet., 2018. 14(11): p. e1007789 [PMID:30418966]