PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | DCAR_030912 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
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Family | ERF | ||||||||
Protein Properties | Length: 677aa MW: 75483.7 Da PI: 4.4813 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 57.5 | 3.4e-18 | 18 | 66 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+W+AeIr+ + +r +lg++ taeeAa a+++a+ +++g DCAR_030912 18 QYRGVRQRP-WGKWAAEIRET-----SgRRLWLGTYNTAEEAAVAYDRAAIRIRG 66 69*******.**********4.....35************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 3.92E-21 | 18 | 75 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 1.3E-29 | 18 | 75 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.6E-32 | 18 | 80 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.446 | 18 | 74 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 4.86E-31 | 18 | 75 | No hit | No description |
Pfam | PF00847 | 5.7E-13 | 19 | 66 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.5E-10 | 19 | 30 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.5E-10 | 40 | 56 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 677 aa Download sequence Send to blast |
MNSSNARRGK SSVPQRGQYR GVRQRPWGKW AAEIRETSGR RLWLGTYNTA EEAAVAYDRA 60 AIRIRGDHAL LNFPDCSKIW RAKLVSPVGG STSGDKGVAE CGASCRDDMK LGLGKEIGER 120 NAEVMQDNIW EQFLQLDTPE SLCGTDENQG TENRDDLGSI ASGTRTDGDC SENEAMSSVY 180 DCMHRSGISF NHDLPSSFDV WQPDWERSDL MPDGVSDMFW NNWNWEVPFN FHIPTDEMQG 240 AKNRDDIDSI ISGTNTDGTC SENEAISGVY ENNSSMLILE NFSSADKWEK LKGDVRGDIA 300 VASRQYGSVS GVLPAHQAGS WNMGSLPQEQ AEKETMISEK QENTSQQLQL IAQSLFKDVT 360 DKNEQVLDTR KSTLNIDLHE EIAAGEMYRR TSNNIQDITH LHKNLDRTEE DLPIKCAEPR 420 PLTHEPKRSN EKGNTMEINF SASEVILKEV IRERTHTLAD QGVDELEQHM PSKSIEPRSL 480 TSQPINSVEF LEDERNAVRS ELPGRDGVMK IHHSALKGTS EEIVKEHAVA VERDEPIEES 540 AADDFEYAAS CEDVGHAMIT ASQPSSLQTM KSLPQQVNMK KVVLENEGDA SSQLPCILQP 600 CEDGNELEDQ VLEMQKSTPI INSHKGIATG ETSSYAPENI PEDIHCWSFY LYVLLDISYH 660 ACVPFMVKIS VWLVCS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 8e-23 | 18 | 74 | 2 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017225664.1 | 0.0 | PREDICTED: uncharacterized protein LOC108201848 isoform X2 | ||||
TrEMBL | A0A175YIM1 | 0.0 | A0A175YIM1_DAUCS; Uncharacterized protein |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G16770.1 | 3e-14 | ethylene-responsive element binding protein |
Link Out ? help Back to Top | |
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Phytozome | DCAR_030912 |