PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_030496
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family ARR-B
Protein Properties Length: 376aa    MW: 42394.2 Da    PI: 8.6606
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_030496genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like80.91.5e-25208257555
      G2-like   5 rWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                   W+ eLH++Fv av+qL G++kA+Pk+il+lm+v+gLt+e+v+SHLQ++Rl
  DCAR_030496 208 LWSVELHQKFVIAVNQL-GIDKAVPKKILKLMNVPGLTRENVASHLQRFRL 257
                  5****************.********************************8 PP
2Response_reg58.44.1e-206014722109
                   TCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTESEEEESS--HHHHHH CS
  Response_reg  22 gyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGakdflsKpfdpeelvk 109
                   ++  +++++ +++a++ll+e++  +Dl+l+D++ p+mdG++ll+ ++  e++lp+i+++a+g  + +++ ++ Ga d+l+Kp+++e+l +
   DCAR_030496  60 QM-YATTCSRATAAINLLRERKccFDLVLIDVQTPDMDGFKLLE-LAGLEMNLPVIMMSAYGRTSAIIRGIRHGACDYLVKPIHEENLKN 147
                   44.78899**********************************95.889999***********************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011025.7832153IPR001789Signal transduction response regulator, receiver domain
SMARTSM004482.6E-934149IPR001789Signal transduction response regulator, receiver domain
Gene3DG3DSA:3.40.50.23008.8E-2859172No hitNo description
PfamPF000723.4E-1562147IPR001789Signal transduction response regulator, receiver domain
SuperFamilySSF521722.56E-2363162IPR011006CheY-like superfamily
CDDcd001567.48E-1964152No hitNo description
PROSITE profilePS512949.827201260IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.0E-25202261IPR009057Homeodomain-like
SuperFamilySSF466891.49E-17203261IPR009057Homeodomain-like
TIGRFAMsTIGR015575.3E-21206257IPR006447Myb domain, plants
PfamPF002491.6E-5209254IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 376 aa     Download sequence    Send to blast
MSQRKQNLKN IAAEGFAMLE QHVHKYQQPK SHVFEVIIPA NVAAQAKKEV VSIDCYQAAQ  60
MYATTCSRAT AAINLLRERK CCFDLVLIDV QTPDMDGFKL LELAGLEMNL PVIMMSAYGR  120
TSAIIRGIRH GACDYLVKPI HEENLKNIWQ HVVRKKCNET KKQEIFSSLD KKDRNRSATS  180
DLEHASAVNE DGSESDDEIS ASEKPIELWS VELHQKFVIA VNQLGIDKAV PKKILKLMNV  240
PGLTRENVAS HLQRFRLYFR RLSVLQQPMG MPFPFYGHVK HDPRLSLREI SDPQTLAASR  300
PIPLQTLTDL HAELLGRPVN DQKIILQGSR QGQKNALGDA GIAHQQPISL LWGHFLHIFP  360
AIFLFCSVVW LIIEL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A8e-20200263164ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017223974.10.0PREDICTED: two-component response regulator ORR21 isoform X1
RefseqXP_017223976.10.0PREDICTED: two-component response regulator ORR21 isoform X2
RefseqXP_017223977.10.0PREDICTED: two-component response regulator ORR21 isoform X2
SwissprotA2XE315e-93ORR21_ORYSI; Two-component response regulator ORR21
SwissprotQ8H7S76e-93ORR21_ORYSJ; Two-component response regulator ORR21
TrEMBLA0A175YHR60.0A0A175YHR6_DAUCS; Uncharacterized protein
STRINGVIT_01s0011g05830.t011e-107(Vitis vinifera)
STRINGPOPTR_0010s11600.11e-108(Populus trichocarpa)
STRINGcassava4.1_003239m1e-108(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA77492130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16110.17e-77response regulator 2
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]