PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_023690
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family TCP
Protein Properties Length: 337aa    MW: 37595.6 Da    PI: 9.5236
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_023690genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP131.67.4e-41672042134
          TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg......kaak 92 
                   gkkdrhski T++g RdRR+Rls+++a++fFdLqd LGfdk+skti+WL+ ++k+aik+l  +ss  + e+ ++++ ++s+++ + +      +   
  DCAR_023690  67 SGKKDRHSKINTAQGVRDRRMRLSLQIARQFFDLQDALGFDKASKTIDWLFSASKKAIKQLDCSSSLVS-EMnNNNTYQKSEQKRKVDvatsegEDII 163
                  68************************************************************9955555.3323333333333222224443323333 PP

          TCP  93 saakskksqksaasalnlakesrakarararertrekmrikn 134
                     k+ +++  + ++ + ake r+kar+rarertrek +i++
  DCAR_023690 164 GL-KTAEKPVASGNTKSTAKELRNKARERARERTREKLMIRS 204
                  33.44444444445889999******************9985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036342.7E-3668200IPR005333Transcription factor, TCP
PROSITE profilePS5136934.36569127IPR017887Transcription factor TCP subgroup
PROSITE profilePS5137010.896182199IPR017888CYC/TB1, R domain
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MAAEYTQRTN LEPIWNEPLP RVNMNTAHWI STNSSTGGIH LHSEPSDHSS KMKKSTTSSK  60
GSTARKSGKK DRHSKINTAQ GVRDRRMRLS LQIARQFFDL QDALGFDKAS KTIDWLFSAS  120
KKAIKQLDCS SSLVSEMNNN NTYQKSEQKR KVDVATSEGE DIIGLKTAEK PVASGNTKST  180
AKELRNKARE RARERTREKL MIRSLEKSNS NICGESYNLA QLGPAEYPNF TGQELMSNPR  240
SQDTTWTSQS SLHSQLANMA LLGATASSSG SVSSSMFNYD EKKDLFTGTG LDSISNNLCY  300
TGNWDFSSEY LNPNSISFQE NRGYHFQYYS DQNQAE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A1e-1274127154Putative transcription factor PCF6
5zkt_B1e-1274127154Putative transcription factor PCF6
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00215DAPTransfer from AT1G67260Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017216882.10.0PREDICTED: transcription factor TCP12-like
TrEMBLA0A164SS390.0A0A164SS39_DAUCS; Uncharacterized protein
STRINGPGSC0003DMT4000193242e-38(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24362359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68800.11e-26TCP domain protein 12