PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_019072
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family C2H2
Protein Properties Length: 363aa    MW: 39722.1 Da    PI: 7.8103
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_019072genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.20.00055134156123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  y+C+ C+++F++   L  H  +H
  DCAR_019072 134 YQCKTCNRTFPSFQALGGHRASH 156
                  9***********99999998887 PP
2zf-C2H214.69.2e-05219241123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  ++C +Cg+ Fs+   L  H+r+H
  DCAR_019072 219 HECAICGTEFSSGQALGGHMRRH 241
                  78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.72E-8133156No hitNo description
PfamPF139123.5E-13133158IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.429134161IPR007087Zinc finger, C2H2
SMARTSM003550.026134156IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280136156IPR007087Zinc finger, C2H2
SuperFamilySSF576674.72E-8214241No hitNo description
Gene3DG3DSA:3.30.160.608.6E-4217243IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139125.3E-11218243IPR007087Zinc finger, C2H2
SMARTSM003550.071219241IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.614219246IPR007087Zinc finger, C2H2
PROSITE patternPS000280221241IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    Send to blast
MCLLMVEEEE HNAQQHEARE GDPVAMSTPS NILKGKRTKR QRPQSPLPFS VAPANSSSNN  60
AGGDYVTSTT TSDEDSAGPG TTEEEEDMAK CLLLLAQGGP KNDSHFGLVP YKFTSKKYLE  120
TSTSTNGKTG IYVYQCKTCN RTFPSFQALG GHRASHRKPK NVNAALENKP RLIISDEDED  180
QPPPFKRSFS ASSLSLQLTT RPNVPFTNAD YNKYSPRVHE CAICGTEFSS GQALGGHMRR  240
HRGGAPVNRS NATATTTNTS TKTLPLLPFC PNPISAIDPI DYHQETKKLK TSSPVNLSLD  300
LNLPAATEDE NKHHKQNLES PSYSFSSQQQ NPQQQQQQQP QQQQKQTSLV LAAAPTLVDC  360
QH*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00487DAPTransfer from AT5G04390Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017251854.10.0PREDICTED: zinc finger protein ZAT5-like
TrEMBLA0A162A5V00.0A0A162A5V0_DAUCS; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA40152343
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04390.11e-57C2H2 family protein