PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_018793
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family TALE
Protein Properties Length: 637aa    MW: 71945.1 Da    PI: 6.7662
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_018793genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.42.9e-094735101954
                  HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
     Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                  Fe   ++yp+ +++  LA ++gLt +qV++WF N R +
  DCAR_018793 473 FEHflHPYPTDSDKHMLAIQTGLTRNQVSNWFINARVR 510
                  554459******************************88 PP
2BELL92.34.7e-30344410672
         BELL   6 qkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                  +kk + Ll l++eV+++Ykqy++q+q+vissFe v g+ sa+pY+s+A k+iS +FrcLkdai++q+
  DCAR_018793 344 HKKMVNLLYLQQEVCRKYKQYQQQMQMVISSFESVEGVSSATPYISVAVKTISMNFRCLKDAISDQL 410
                  7999************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005744.0E-34287408IPR006563POX domain
PfamPF075262.6E-30292407IPR006563POX domain
PROSITE profilePS5007111.596451514IPR001356Homeobox domain
CDDcd000867.26E-12454515No hitNo description
SMARTSM003892.8E-9454518IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.5E-28457518IPR009057Homeodomain-like
SuperFamilySSF466899.84E-17458521IPR009057Homeodomain-like
PfamPF059201.2E-17471510IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 637 aa     Download sequence    Send to blast
MEMNNIPGGG SHVAQHRWRD KLRAQQQNSF DHNFEQLWLH QVHIPDPDDQ FRNSKYGTLS  60
PHDQTVFSSQ TLNSATKCSQ NDCFSNSMIS SYLPHPDSSS NLNLLADNYT GNLNASFLAD  120
VTNDVCAYPR QPHCYSYQDV AHSSLGESSN NIITSPFDYQ NTLVNVEELD MARYSAKDSN  180
EVLLHFLPSF GESNSLSNTP VDQAFRQWNV ESVANKSHDP QGLSLSLSVD ILESSNLDET  240
RCSKALKYSN YLCSTSKQSC AGSKGGFGVE YGRRNIHNVA GPHGPFTGYA SILKDSKYLK  300
PTLELLEDLC GSKQKISEIY PDKIDDEEEF LGSSASESSW PTYHKKMVNL LYLQQEVCRK  360
YKQYQQQMQM VISSFESVEG VSSATPYISV AVKTISMNFR CLKDAISDQL KHTGKELGEA  420
LSSPTAGTSS HTILKQKTCA SNHRVSRFEK QPVWKPQRGL PERAVSVLRA WLFEHFLHPY  480
PTDSDKHMLA IQTGLTRNQV SNWFINARVR IWKPMVEEIH SLETKALAEA SSRMTRDKVR  540
EKMVSECASL QYNYDHPANR QSGMDAFTNN DRRSREDFWN EEKRSRTECH IPVSIDGSLV  600
SLVPYQQEQD GQGNVSLTLG LRQNVQQQMH QHGQHL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrm_A3e-16460518563Homeobox protein Meis2
4xrm_B3e-16460518563Homeobox protein Meis2
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017251229.10.0PREDICTED: BEL1-like homeodomain protein 9
TrEMBLA0A164Z9590.0A0A164Z959_DAUCS; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA87202227
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27990.12e-73BEL1-like homeodomain 8