PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_017238
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family GRAS
Protein Properties Length: 423aa    MW: 47492.2 Da    PI: 5.4489
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_017238genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS324.32.4e-99724212374
         GRAS   2 velLlecAeavssgdlelaqalLarlsel.aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 
                  v+ L++ Ae++++++l+laqa+La l+++ +sp+g+p+qR+a+yf+eAL++ l++      ++lp +++  +n++++++a+++fs+vsPi+ f+++ta
  DCAR_017238  72 VDELIRLAECFETNSLQLAQAILAPLNHRlSSPNGKPLQRAAFYFKEALQSLLTG------NTLPDNSS--ENVVQTIKAYRTFSNVSPIPMFANFTA 161
                  678*************************99*************************......66655555..48************************* PP

         GRAS  99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLa.sRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLr 195
                  NqaIleaveg+  vH+iDfdi+ G+QW+++++++a +R+++pp +RiT+++++  + + e + + e+L +fA+el++ fe++++ ++++e l++++ +
  DCAR_017238 162 NQAILEAVEGAMIVHVIDFDIGFGGQWASFMREIAeNRKSNPPVIRITAIVPE--DYAMESRLMTENLCQFARELNIGFEIDFISVRTFEFLSFKSVK 257
                  ***********************************7899*************5..599999************************************* PP

         GRAS 196 vkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl.eaklpres.eerikvErellg 291
                  + +gE++aV l+  ++r              ++  ++++sP+vvv+v+ e +  ++sF + ++e le+ys++f+sl +a+++    ++ +k+E +++ 
  DCAR_017238 258 FAEGEKIAVLLSPTIFRRI---------GAGFVTDLRRISPHVVVHVDFEGSI-ASSFRQAVIEGLEFYSTVFESLeAANVGVCGgDWIRKIEMFVML 345
                  *************999998.........347*********************9.889*******************7778877667999********* PP

         GRAS 292 reivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                  ++i ++  ++g++          Wre +  aGF++v ls++a  qa++llr+v+++g++v ++++++vl+W+dr+Lv++SaWr
  DCAR_017238 346 PKIISAMEAAGRR-------ETPWREVFAGAGFRAVGLSQFADFQAECLLRRVQVRGFHVAKRQAEMVLCWHDRALVATSAWR 421
                  ***9999999987.......479***********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098543.36845401IPR005202Transcription factor GRAS
PfamPF035148.2E-9772421IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0030154Biological Processcell differentiation
GO:0048831Biological Processregulation of shoot system development
Sequence ? help Back to Top
Protein Sequence    Length: 423 aa     Download sequence    Send to blast
MRDLGLHDDN NSLHLSRSIP QDPILPPPQH LITDLPIPSY DQSSNFEFTN FHSSFATDQA  60
LMSQYNSEFD FVDELIRLAE CFETNSLQLA QAILAPLNHR LSSPNGKPLQ RAAFYFKEAL  120
QSLLTGNTLP DNSSENVVQT IKAYRTFSNV SPIPMFANFT ANQAILEAVE GAMIVHVIDF  180
DIGFGGQWAS FMREIAENRK SNPPVIRITA IVPEDYAMES RLMTENLCQF ARELNIGFEI  240
DFISVRTFEF LSFKSVKFAE GEKIAVLLSP TIFRRIGAGF VTDLRRISPH VVVHVDFEGS  300
IASSFRQAVI EGLEFYSTVF ESLEAANVGV CGGDWIRKIE MFVMLPKIIS AMEAAGRRET  360
PWREVFAGAG FRAVGLSQFA DFQAECLLRR VQVRGFHVAK RQAEMVLCWH DRALVATSAW  420
RF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A5e-317742025378Protein SCARECROW
5b3h_A5e-317742024377Protein SCARECROW
5b3h_D5e-317742024377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ5201590.0KJ520159.1 Daucus carota subsp. carota clone sca274297 anonymous marker DC11423 genomic sequence.
GenBankKJ5201630.0KJ520163.1 Daucus carota subsp. carota clone sca390887 anonymous marker DC11423 genomic sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017254092.10.0PREDICTED: scarecrow-like protein 15
SwissprotO232101e-134SCL15_ARATH; Scarecrow-like protein 15
TrEMBLA0A164Y5530.0A0A164Y553_DAUCS; Uncharacterized protein
STRINGXP_009803270.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA83052230
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36710.11e-137GRAS family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]