PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_013720
Common NameC-HAP5B
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family NF-YC
Protein Properties Length: 250aa    MW: 28196.6 Da    PI: 4.6084
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_013720genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC171.68.7e-54791831102
        NF-YC   1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdi 95 
                  ql++fw++q   i+++ dfknh+lPlarikki+kadedv+mis+eaPv+++kace+filelt+rswl +eenkrrtl+k+diaaa++rtdifdflvdi
  DCAR_013720  79 QLQAFWANQiqeIGQTPDFKNHSLPLARIKKIMKADEDVRMISSEAPVIFAKACEMFILELTMRSWLLTEENKRRTLQKNDIAAAISRTDIFDFLVDI 176
                  89******977778999********************************************************************************* PP

        NF-YC  96 vprdelk 102
                  +prdelk
  DCAR_013720 177 IPRDELK 183
                  ****975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471134.94E-3372173IPR009072Histone-fold
PfamPF008082.9E-21101164IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.101.7E-36102179IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MDESEEPQQQ QEAVIDSAGQ MTYGVPHYHA VGLGVATGTP VVPVSAPTQH PTGATSQQQP  60
EYYEAQHVYQ QQQLQLRTQL QAFWANQIQE IGQTPDFKNH SLPLARIKKI MKADEDVRMI  120
SSEAPVIFAK ACEMFILELT MRSWLLTEEN KRRTLQKNDI AAAISRTDIF DFLVDIIPRD  180
ELKEEGLGIT KATIPLLGSP ADSVPYYYVP QQHAVEQAGF YPDQQAHPQL PYMSWQQPHE  240
HKDQEENGD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5g49_B3e-5487179395NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1151157RRTLQKN
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of flowering time under long day (LD) conditions. Functions as repressor of flowering, independently of HD1 and GHD7. Controls flowering time by negatively regulating the expression of EHD1 and HD3A (PubMed:26542958). Component of the NF-Y/HAP transcription factor complex (By similarity). {ECO:0000250, ECO:0000269|PubMed:26542958}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Circadian-regulation under long day (LD) conditions. Expression increases in the middle of daytime, peaks around the end of the light period and gradually decreases during the dark period and beginning of daylight. {ECO:0000269|PubMed:26542958}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB1046130.0AB104613.1 Daucus carota C-HAP5B mRNA for CCAAT-box binding factor HAP5 homolog, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017244940.10.0PREDICTED: nuclear transcription factor Y subunit C-2-like
RefseqXP_017244941.10.0PREDICTED: nuclear transcription factor Y subunit C-2-like
SwissprotQ655V52e-75NFYC4_ORYSJ; Nuclear transcription factor Y subunit C-4
TrEMBLA0A165YA220.0A0A165YA22_DAUCS; Uncharacterized protein
STRINGEOY141513e-96(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA34222447
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G56170.23e-76nuclear factor Y, subunit C2
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Kim SK, et al.
    OsNF-YC2 and OsNF-YC4 proteins inhibit flowering under long-day conditions in rice.
    Planta, 2016. 243(3): p. 563-76
    [PMID:26542958]