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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | DCAR_008173 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
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Family | WRKY | ||||||||
Protein Properties | Length: 593aa MW: 64022.9 Da PI: 7.4428 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 96.2 | 2.2e-30 | 343 | 401 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v+r+aed +++++tYeg Hnh+ DCAR_008173 343 TDGCQWRKYGQKMAKGNPCPRAYYRCTMAgGCPVRKQVQRCAEDRTILITTYEGAHNHP 401 7****************************9****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 5.7E-33 | 327 | 403 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.09E-27 | 335 | 403 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 29.448 | 337 | 403 | IPR003657 | WRKY domain |
SMART | SM00774 | 5.8E-36 | 342 | 402 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.7E-26 | 344 | 401 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 593 aa Download sequence Send to blast |
MVNISTTKAS NSLTLNLSTS CFLVYFSSVS FSSRGTRRTR RDGATETLIF SSLVGPHSSH 60 LSPPLTHHLT DSAGSSPSGN NPRVVIGELD LFSSKKTNDN YDHSVHYPVM DSSIDVAMKH 120 EKSRSEAQLD VNTRLHLLTA NPGSDQSMVD DGVSSSLVDE EAKNKLLRIQ SELERMNTEN 180 ERLRGMVSHV TNNYAALQMH IVTVMQQQNA RAETTPEQQI GEEKTQDRND GSGDHQGHIV 240 PRQFLDLGPS RGDNQSHSSS EQRTQSGSDI NNVELNNGNR IHAAGKRIDR EDSPHPESWN 300 SNKAPKIIAS SNSTSNAVDQ VTEATMRKAR VSVRARSDAP MITDGCQWRK YGQKMAKGNP 360 CPRAYYRCTM AGGCPVRKQV QRCAEDRTIL ITTYEGAHNH PLPPAAMAMA STTSAAANML 420 LSGSMSSGEG IMNPNLLARA ILPMSSSSMA TISASAPFPT VTLDLTQSPN PLQYQRPSSQ 480 FQGPFQAAPP QQNFVGLSPS PQVFGHPVYN QSKFSGLHVS SQDMAGSNHL QAQAQAHHPP 540 PQFHQSQPQT SFEDTLSAAT AAITTDPNFT AALAAAISSM MGGSTGHHNN SN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 6e-21 | 329 | 405 | 1 | 76 | WRKY transcription factor 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in the control of processes related to senescence and pathogen defense (PubMed:12000796). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (PubMed:12000796). Activates the transcription of the SIRK gene and represses its own expression and that of the WRKY42 genes (PubMed:12000796). Modulates phosphate homeostasis and Pi translocation by regulating PHO1 expression (PubMed:25733771). {ECO:0000269|PubMed:12000796, ECO:0000269|PubMed:25733771}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salicylic acid, ethylene, jasmonic acid, pathogens, wounding and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017232877.1 | 0.0 | PREDICTED: WRKY transcription factor 6-like | ||||
Swissprot | Q9C519 | 1e-141 | WRKY6_ARATH; WRKY transcription factor 6 | ||||
TrEMBL | A0A166F4L1 | 0.0 | A0A166F4L1_DAUCS; Uncharacterized protein | ||||
STRING | EOY28756 | 0.0 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA945 | 24 | 92 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G62300.1 | 1e-113 | WRKY family protein |
Link Out ? help Back to Top | |
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Phytozome | DCAR_008173 |