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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | DCAR_006949 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
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Family | WRKY | ||||||||
Protein Properties | Length: 236aa MW: 25718.5 Da PI: 5.3313 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 98.8 | 3.4e-31 | 70 | 128 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D ++WrKYGqK++kgs++pr+YYrC+++ gC ++k+ver+++dp+++++tY+ eHnh+ DCAR_006949 70 SDMWSWRKYGQKPIKGSPYPRGYYRCSTSkGCLARKQVERNRSDPTMFIVTYTAEHNHP 128 79************************9988****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 2.7E-31 | 58 | 130 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 35.152 | 64 | 130 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 9.42E-27 | 66 | 130 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.5E-36 | 69 | 129 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.9E-26 | 71 | 128 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010150 | Biological Process | leaf senescence | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 236 aa Download sequence Send to blast |
MDDDWDLYAV VRSCTAAAAA GKSTLSATPS QPMWNNPITS PPFRVQENEH SARKNQMKRV 60 CHVPSEGLSS DMWSWRKYGQ KPIKGSPYPR GYYRCSTSKG CLARKQVERN RSDPTMFIVT 120 YTAEHNHPVP THRNSLAGST RQKVSSSEGV SDGDPNKPTC STPISPAASL SPAPEKCEIG 180 EEDEELWASD TPLSDDFFMG LEDIEMPAAG DGEMDHFPMF PWTGNNATTT AAGGV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5w3x_B | 4e-22 | 54 | 131 | 2 | 80 | Disease resistance protein RRS1 |
5w3x_D | 4e-22 | 54 | 131 | 2 | 80 | Disease resistance protein RRS1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in the expression of defense genes in innate immune response of plants. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Activates WRKY 29, SIRK and its own promoters. {ECO:0000269|PubMed:11875555}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00422 | DAP | Transfer from AT4G01250 | Download |
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Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced after flagellin treatment. {ECO:0000269|PubMed:11875555}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017232518.1 | 1e-135 | PREDICTED: WRKY transcription factor 22 | ||||
Swissprot | O04609 | 6e-65 | WRK22_ARATH; WRKY transcription factor 22 | ||||
TrEMBL | A0A166E5A5 | 1e-176 | A0A166E5A5_DAUCS; Uncharacterized protein | ||||
STRING | Solyc01g095100.2.1 | 1e-73 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2591 | 24 | 57 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G01250.1 | 4e-64 | WRKY family protein |
Link Out ? help Back to Top | |
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Phytozome | DCAR_006949 |