![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | DCAR_006905 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
|
||||||||
Family | G2-like | ||||||||
Protein Properties | Length: 629aa MW: 70008.5 Da PI: 4.4933 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 81.8 | 7.6e-26 | 70 | 123 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k rl Wt+e+H++F++a+eq+ G+++A Pk+i+e+m+v+gLt+e+v+SHLQkYR+ DCAR_006905 70 KRRLIWTTEMHQKFLDAIEQI-GHDRAFPKKIVEVMNVPGLTRENVASHLQKYRI 123 689******************.********************************6 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 9.557 | 67 | 126 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 6.45E-20 | 68 | 127 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.2E-26 | 69 | 128 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.1E-22 | 70 | 123 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 1.1E-5 | 75 | 122 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 629 aa Download sequence Send to blast |
MEKEIQELYE KGGDEADADH VTRESSNKTD AFLRDETNQT TKNGKGKDHK ESSSEPDTSG 60 DQDDSHVPKK RRLIWTTEMH QKFLDAIEQI GHDRAFPKKI VEVMNVPGLT RENVASHLQK 120 YRICLKKVQE GMDKYYWGPN TEANCTRVPY AYESLLGTPR HHFSGSSHLA SRNFYSMSSS 180 SHSSLYGQCS AIGNSRVRLA PPSYSSFDVS SLSMNTGNVP TQYNQMTEVN TNVRGYCDDK 240 RNKLLSILNR RPTSNTPDDH ATSSSSTSNS AFIGLRIASD GKSLFLGGSD RSEIVPAENY 300 SAKRNDFNLQ ESALPPLTCS NIENYFQDSS LPPLPGSNTE DHFGDSSFPS FPEFQVENSW 360 QQLKTSENEH ISWQQLARNI EDDLITFNPQ QETYGTNETE NGHTGTYLEQ QNCLHSLPWE 420 ILENADWELI KKILPNNHTV NPLPSLSAPS NPNSNMASCL INNNLSNQED SLPPLPSDIP 480 WSLYPDSNSS NHSANVLNQQ NLLPPLVSET GWNETSDVST MPINNISDHQ NLLASFPSDY 540 FWNLDSDPVH PIIVPPSVPE AYEGAVQQPP SLPDNTVNQV IPQPINTYFS ESNFEEGIGD 600 IKNLEEGIGD SSPGLLDFIG FHDTLSNE* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1irz_A | 3e-20 | 69 | 128 | 4 | 63 | ARR10-B |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_017231592.1 | 0.0 | PREDICTED: two-component response regulator ARR18-like | ||||
Refseq | XP_017231593.1 | 0.0 | PREDICTED: two-component response regulator ARR18-like | ||||
TrEMBL | A0A166E461 | 0.0 | A0A166E461_DAUCS; Uncharacterized protein |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G16110.1 | 2e-24 | response regulator 2 |
Link Out ? help Back to Top | |
---|---|
Phytozome | DCAR_006905 |