PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | DCAR_005817 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
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Family | C3H | ||||||||
Protein Properties | Length: 77aa MW: 8363.22 Da PI: 6.493 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 36.9 | 6.2e-12 | 46 | 70 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++C +++rtG C yG++C+++H++ DCAR_005817 46 VPNCAYYMRTGSCGYGNKCRYNHPR 70 799********************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 4.6E-4 | 43 | 70 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.188 | 43 | 71 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.0E-9 | 45 | 70 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.22E-7 | 47 | 71 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.6E-6 | 49 | 70 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 77 aa Download sequence Send to blast |
MELYGHSGNG SQTDQWAAPG QETGLEESMM RLGLLGGELY PERGGVPNCA YYMRTGSCGY 60 GNKCRYNHPR DRNSVS* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017236101.1 | 4e-47 | PREDICTED: zinc finger CCCH domain-containing protein 32-like | ||||
Swissprot | Q84W91 | 1e-23 | C3H32_ARATH; Zinc finger CCCH domain-containing protein 32 | ||||
TrEMBL | A0A166D9X7 | 5e-49 | A0A166D9X7_DAUCS; Uncharacterized protein | ||||
STRING | XP_009776613.1 | 4e-27 | (Nicotiana sylvestris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47850.2 | 3e-26 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | DCAR_005817 |