PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_004784
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family C3H
Protein Properties Length: 296aa    MW: 33556.2 Da    PI: 7.1677
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_004784genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH38.42.1e-12190215126
                  --S---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                  y   +C+++ +tG+C yGd+CkF+H+
  DCAR_004784 190 YQPDICKDYKETGYCGYGDSCKFMHD 215
                  67789********************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902291.7E-9188220IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.878189217IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-7189216IPR000571Zinc finger, CCCH-type
PfamPF006423.9E-10190215IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.4E-12190220IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:3.30.40.105.9E-10247292IPR013083Zinc finger, RING/FYVE/PHD-type
SuperFamilySSF578508.97E-10262293No hitNo description
CDDcd001621.17E-5265291No hitNo description
PfamPF000971.1E-4265292IPR018957Zinc finger, C3HC4 RING-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MAESSEPPRQ PESVCTFFKK PTKNKNIRKR NLIEDDGVEE DEGSKSETVT VNRKKSSLPD  60
NKLHFSTAPT KQLKSSDVET KKEQTLFQFE SSSAIQVQND SRATATLETE TDFSRDARAI  120
RERVLKQAEA ALKGKNKGEG DDKLYKGINA YTDHKAGFRR EQTVAGEKAG GSHGPLRASA  180
HIRVSARFDY QPDICKDYKE TGYCGYGDSC KFMHDRGDYK SGWQLEKEWD EKEKARKRNL  240
ALKQFESDEE AEQSDEDDDS LPFACFICRQ PFADPVVTKC KHYFCEHCAL KVSHR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5z56_M3e-5912911288RING finger protein 113A
5z58_M3e-5912911288RING finger protein 113A
6ff4_t3e-5912911288RING finger protein 113A
6ff7_t3e-5912911288RING finger protein 113A
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017259151.10.0PREDICTED: zinc finger CCCH domain-containing protein 1-like
SwissprotQ8GX841e-137C3H1_ARATH; Zinc finger CCCH domain-containing protein 1
TrEMBLA0A166JG620.0A0A166JG62_DAUCS; Uncharacterized protein
STRINGXP_010103154.11e-146(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA44032337
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01350.11e-138C3H family protein