PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | DCAR_002486 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
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Family | ERF | ||||||||
Protein Properties | Length: 262aa MW: 29597.4 Da PI: 6.407 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 65.4 | 1.1e-20 | 92 | 141 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 +y+G+r+++ +g+W++eIrdp + r++lg+f t+eeAa+a+++a+k+++g DCAR_002486 92 KYRGIRQRP-WGKWASEIRDPQ----KgVRVWLGTFSTPEEAARAYDEAAKRIRG 141 8********.**********94....35************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 4.7E-33 | 92 | 150 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.76E-35 | 92 | 151 | No hit | No description |
Pfam | PF00847 | 5.9E-14 | 92 | 141 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.933 | 92 | 149 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.24E-22 | 92 | 151 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 1.0E-40 | 92 | 155 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.0E-11 | 93 | 104 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.0E-11 | 115 | 131 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 262 aa Download sequence Send to blast |
MCGGAIISDF ERPPLTTGSR KVNKHDLWDQ PGFASTLPQL SGSWTDHFDA KLPQLPLHGR 60 PLKPKKIITK EEVSEEGEKL SQEGNKRSRK NKYRGIRQRP WGKWASEIRD PQKGVRVWLG 120 TFSTPEEAAR AYDEAAKRIR GDKARLNFPD DHPPEPVPLP PLAKKQCTPK AITEINSPNF 180 SSPLMGMEFS TTFQPPNYCA SHGADELELK DDHQVSNMES SLLGWEAEIM SQIGVTESDV 240 YRWMMMDNLD QIANHLMQEF E* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 3e-22 | 93 | 149 | 3 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB354582 | 0.0 | AB354582.1 Daucus carota DcERF2 mRNA for transcription factor DcERF2, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017231969.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor ERF071-like | ||||
TrEMBL | A0A169WSD5 | 0.0 | A0A169WSD5_DAUCS; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA21 | 24 | 1165 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G16770.1 | 1e-45 | ethylene-responsive element binding protein |
Link Out ? help Back to Top | |
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Phytozome | DCAR_002486 |