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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
Cucsa.379650.1 |
| Common Name | Csa_6G301060, LOC101220383 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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| Family |
WOX |
| Protein Properties |
Length: 194aa MW: 22369.9 Da PI: 6.9668 |
| Description |
WOX family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Cucsa.379650.1 | genome | JGI | View CDS |
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| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Homeobox | 61.8 | 1e-19 | 9 | 68 | 3 | 57 |
--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
Homeobox 3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
+R+++t+eq+ +Lee +++ ++p+a+++++++++l +++ ++V++WFqN++a++++
Cucsa.379650.1 9 SRWCPTPEQVMILEEIYRNgLKTPNATQIQHITSHLsfygKIEGKNVFYWFQNHKARDRQ 68
7*****************99*************************************996 PP
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| 2 | Wus_type_Homeobox | 117.2 | 7.7e-38 | 9 | 69 | 4 | 64 |
Wus_type_Homeobox 4 tRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64
+RW+PtpeQ++iLee+y++Gl+tPn+ +iq+it++L+ yGkie+kNVfyWFQN+kaR+rqk
Cucsa.379650.1 9 SRWCPTPEQVMILEEIYRNGLKTPNATQIQHITSHLSFYGKIEGKNVFYWFQNHKARDRQK 69
8***********************************************************9 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 194 aa
Download sequence Send
to blast |
MSPSSITPSR WCPTPEQVMI LEEIYRNGLK TPNATQIQHI TSHLSFYGKI EGKNVFYWFQ 60
NHKARDRQKL RRKLYKQLQQ HHFFMKRQRF DDHQHDHHHF FQYFLPHHVP QLLPQLPSPS 120
SLQREVGEEE AATEVEGGGG RRWMGGDEGT TVEEEDGETT CGNGTLRTLE LFPVRASWVK 180
EEEGTSGNGG WGN*
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| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Probable transcription factor required to initiate organ founder cells in a lateral domain of shoot meristems. Involved in the lateral sepal axis-dependent development of flowers, probably by regulating the proliferation of L1 cells at the lateral region of flower primordia. Required for the formation of the margin cells of the first and second whorl organs. {ECO:0000269|PubMed:11751640, ECO:0000269|PubMed:15169755}. |
| Publications
? help Back to Top |
- Ren Y, et al.
An integrated genetic and cytogenetic map of the cucumber genome.
PLoS ONE, 2009. 4(6): p. e5795
[PMID:19495411] - Guo S, et al.
Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
BMC Genomics, 2010. 11: p. 384
[PMID:20565788] - Li Z, et al.
RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
BMC Genomics, 2011. 12: p. 540
[PMID:22047402] - Chandler JW,Werr W
Arabidopsis floral phytomer development: auxin response relative to biphasic modes of organ initiation.
J. Exp. Bot., 2014. 65(12): p. 3097-110
[PMID:24744428] - Niu L, et al.
LOOSE FLOWER, a WUSCHEL-like Homeobox gene, is required for lateral fusion of floral organs in Medicago truncatula.
Plant J., 2015. 81(3): p. 480-92
[PMID:25492397] - Alvarez JP,Furumizu C,Efroni I,Eshed Y,Bowman JL
Active suppression of a leaf meristem orchestrates determinate leaf growth.
Elife, 2017.
[PMID:27710768] - Guan C, et al.
Spatial Auxin Signaling Controls Leaf Flattening in Arabidopsis.
Curr. Biol., 2017. 27(19): p. 2940-2950.e4
[PMID:28943086]
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