PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cucsa.345940.2 | ||||||||
Common Name | Csa_7G051420, LOC101213813 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | NF-YC | ||||||||
Protein Properties | Length: 267aa MW: 29961.7 Da PI: 6.4183 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 178.8 | 5e-56 | 81 | 185 | 1 | 102 |
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdfl 92 ql++fw++q ie++tdfknh+lPlarikki+kadedv+misaeaPv+++kace+fileltlrsw+h+eenkrrtl+k+diaaa++rtd+fdfl Cucsa.345940.2 81 QLQMFWANQmqeIEQTTDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFAKACEMFILELTLRSWIHTEENKRRTLQKNDIAAAISRTDVFDFL 175 89******988889********************************************************************************* PP NF-YC 93 vdivprdelk 102 vdi+prdelk Cucsa.345940.2 176 VDIIPRDELK 185 *******975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 1.39E-34 | 59 | 175 | IPR009072 | Histone-fold |
Gene3D | G3DSA:1.10.20.10 | 1.9E-37 | 95 | 167 | IPR009072 | Histone-fold |
Pfam | PF00808 | 2.3E-21 | 103 | 166 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 267 aa Download sequence Send to blast |
MDQSERSQHQ QQSQQPAGGV GAGQLQYSNP YQTAPMVASG TPAITIPPTQ PPSSFSNSPH 60 QLAYQQAQHF HHQQQQQQQQ QLQMFWANQM QEIEQTTDFK NHSLPLARIK KIMKADEDVR 120 MISAEAPVIF AKACEMFILE LTLRSWIHTE ENKRRTLQKN DIAAAISRTD VFDFLVDIIP 180 RDELKEEGLG ITKASLPVVG SPADLPYYYV PSQHPVGATG MIMGKQLDQA NMYGATAQQP 240 RPSMPFMPWP HTQPQQQQQT QQQSDG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_B | 5e-59 | 89 | 181 | 3 | 95 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 153 | 159 | RRTLQKN |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in the regulation of flowering time under long day (LD) conditions. Functions as repressor of flowering, independently of HD1 and GHD7. Controls flowering time by negatively regulating the expression of EHD1 and HD3A (PubMed:26542958). Component of the NF-Y/HAP transcription factor complex (By similarity). {ECO:0000250, ECO:0000269|PubMed:26542958}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Circadian-regulation under long day (LD) conditions. Expression increases in the middle of daytime, peaks around the end of the light period and gradually decreases during the dark period and beginning of daylight. {ECO:0000269|PubMed:26542958}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681792 | 0.0 | LN681792.1 Cucumis melo genomic scaffold, anchoredscaffold00034. | |||
GenBank | LN713255 | 0.0 | LN713255.1 Cucumis melo genomic chromosome, chr_1. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004136852.1 | 0.0 | PREDICTED: nuclear transcription factor Y subunit C-2 | ||||
Refseq | XP_008455266.1 | 0.0 | PREDICTED: nuclear transcription factor Y subunit C-2 | ||||
Refseq | XP_008455267.1 | 0.0 | PREDICTED: nuclear transcription factor Y subunit C-2 | ||||
Refseq | XP_011658757.1 | 0.0 | PREDICTED: nuclear transcription factor Y subunit C-2 | ||||
Refseq | XP_016901763.1 | 0.0 | PREDICTED: nuclear transcription factor Y subunit C-2 | ||||
Swissprot | Q655V5 | 5e-81 | NFYC4_ORYSJ; Nuclear transcription factor Y subunit C-4 | ||||
TrEMBL | A0A0A0K5U1 | 0.0 | A0A0A0K5U1_CUCSA; Uncharacterized protein | ||||
TrEMBL | A0A1S3C190 | 0.0 | A0A1S3C190_CUCME; nuclear transcription factor Y subunit C-2 | ||||
STRING | XP_008455266.1 | 0.0 | (Cucumis melo) | ||||
STRING | XP_004136852.1 | 0.0 | (Cucumis sativus) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G56170.2 | 1e-81 | nuclear factor Y, subunit C2 |
Link Out ? help Back to Top | |
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Phytozome | Cucsa.345940.2 |
Entrez Gene | 101213813 |
Publications ? help Back to Top | |||
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