PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.308760.2
Common NameCsa_5G622480, LOC101210923
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family NAC
Protein Properties Length: 451aa    MW: 49857.9 Da    PI: 6.5188
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.308760.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1676.5e-52301571128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                     l+pGfrFhPtdeelv +yLk+kv gk++++ ++i+evdiyk+ePwdL   +++k++++e+yfFs  dkky +g r nrat++gyWkatg+d++v 
  Cucsa.308760.2  30 LAPGFRFHPTDEELVIYYLKRKVCGKSFRF-NAISEVDIYKSEPWDLAgkSRLKSRDQEYYFFSVLDKKYGNGARMNRATSQGYWKATGNDRPVR 123
                     579*************************99.89**************85348889999************************************* PP

             NAM  94 skkgelvglkktLvfykgrapkgektdWvmheyrl 128
                     + ++++vglkktLvf++grap+g++t+Wvmheyrl
  Cucsa.308760.2 124 H-DSRNVGLKKTLVFHSGRAPDGKRTNWVMHEYRL 157
                     *.999****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.58E-5926184IPR003441NAC domain
PROSITE profilePS5100557.04630184IPR003441NAC domain
PfamPF023657.4E-2632157IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009555Biological Processpollen development
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0005730Cellular Componentnucleolus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 451 aa     Download sequence    Send to blast
MGSETLTLST PLPPTKPIAA PPPAAAPTAL APGFRFHPTD EELVIYYLKR KVCGKSFRFN  60
AISEVDIYKS EPWDLAGKSR LKSRDQEYYF FSVLDKKYGN GARMNRATSQ GYWKATGNDR  120
PVRHDSRNVG LKKTLVFHSG RAPDGKRTNW VMHEYRLVDE ELEKAGAGTG SSQDAYVLCR  180
VFHKSNIGPP NGHRYAPFIE EEWDDAGSVL IPGEEIADGK IASHDAQSER NSNSVCAAEG  240
SNDGACGEGK DGMQDKAHFI NKDPVISNDP PRSSHNFLFV CKSEKLEDYT PPSIIANPKP  300
FPLMKYKRRR QSDLTSELSK GSENSSMSNE EPSLSETAIA SQTDITTTSV TTPTTKNFLS  360
TLVEYSLLES AEPKDAPAPP PALETSDLSS SVHPSILKFI QDLQHEIHKT SMERETLKFE  420
LLSARAMISI LQSRIVVLNK EINDLKSNYD *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-47241869170Stress-induced transcription factor NAC1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00612ChIP-seqTransfer from AT3G10490Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818960.0LN681896.1 Cucumis melo genomic scaffold, anchoredscaffold00016.
GenBankLN7132640.0LN713264.1 Cucumis melo genomic chromosome, chr_10.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004142442.10.0PREDICTED: NAC transcription factor ONAC010
TrEMBLA0A0A0KWQ00.0A0A0A0KWQ0_CUCSA; Uncharacterized protein
STRINGXP_004168805.10.0(Cucumis sativus)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10480.11e-116NAC domain containing protein 50
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]