PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.201260.1
Common NameCsa_4G043830, LOC101214896
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family GRAS
Protein Properties Length: 509aa    MW: 56937.6 Da    PI: 6.291
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.201260.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS2969.7e-911445053374
            GRAS   3 elLlecAeavssgdlelaqalLarlsel..aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                     e L+++A++++s+d++la+ +L+rl+++  ++++++p++R+a++++eAL++ l+  +++ y     + +s+++ +++++a+k+fs +sPil fsh
  Cucsa.201260.1 144 EDLVAAADCFDSNDFQLAHVILERLNQRlqSTSSAKPLHRAAFFIKEALQSLLSP-STNPY----NRLSSWSDIVHTIKAYKAFSSISPILMFSH 233
                     679************************98677777*******************9.33344....455555669********************* PP

            GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpeg....ppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrl 186
                     +t+Nqa+lea++ ++ +Hi+Dfdi+ G+Q++++++++a+++e+    pp lRiT+v+++e   + e + ++e+L +fA+ l+++f+++++  +++
  Cucsa.201260.1 234 FTTNQALLEALNASSFIHIVDFDIGFGGQYASFMKEIAEKAESkniaPPVLRITAVVPEE--FAIESRLIRENLFQFAQDLKIRFHIDLVPLRTF 326
                     **************************************9994445559**********65..8889999********************9999** PP

            GRAS 187 edleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqe..adhnsesFlerflealeyysalfdsleaklpres 279
                     ++l++++ ++ +gE++a+ l  +++r l  sv++     ++L  ++++sP vvv+v+ e  +d +++sF + +++ le+y+++++sl+a  +   
  Cucsa.201260.1 327 QTLSFKSVKFMEGEKTAILLTPSIFRRLG-SVNV---VASFLADIQQVSPCVVVFVDGEgwSDSGGTSFKRNLVKNLEFYATMLESLDAA-GVSG 416
                     ***************************93.3333...447*******************77788999********************777.5667 PP

            GRAS 280 eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     e+ + +E ++l+++i  ++   g +       + +Wre +e aG++pv+ls++a  qa++ll kv+++g++v  ++++lvl+W++rpLv++SaWr
  Cucsa.201260.1 417 EWVRRIETFILRPKIFAMIEGGGGM------AATQWREVFEGAGMRPVALSQFADFQAECLLGKVQVRGFQVGRRHAELVLCWHERPLVATSAWR 505
                     9999******************998......789************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098536.751116485IPR005202Transcription factor GRAS
PfamPF035143.4E-88144505IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 509 aa     Download sequence    Send to blast
MRVPVPNHQS SSLPSSTPKL HSEPTSVLDL RRTPSPVAPD NPLSVAHDRH NNHPLDWDEQ  60
ALHNLDWDSI MGDLGLHDDS NSSLQNNTNH DRVPNFPEFL HSQSLDQTSH LLPPDFFLSE  120
PFSNHSPTIL QSFNSNNPSL DFFEDLVAAA DCFDSNDFQL AHVILERLNQ RLQSTSSAKP  180
LHRAAFFIKE ALQSLLSPST NPYNRLSSWS DIVHTIKAYK AFSSISPILM FSHFTTNQAL  240
LEALNASSFI HIVDFDIGFG GQYASFMKEI AEKAESKNIA PPVLRITAVV PEEFAIESRL  300
IRENLFQFAQ DLKIRFHIDL VPLRTFQTLS FKSVKFMEGE KTAILLTPSI FRRLGSVNVV  360
ASFLADIQQV SPCVVVFVDG EGWSDSGGTS FKRNLVKNLE FYATMLESLD AAGVSGEWVR  420
RIETFILRPK IFAMIEGGGG MAATQWREVF EGAGMRPVAL SQFADFQAEC LLGKVQVRGF  480
QVGRRHAELV LCWHERPLVA TSAWRFKC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A3e-2517150530375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818740.0LN681874.1 Cucumis melo genomic scaffold, anchoredscaffold00031.
GenBankLN7132610.0LN713261.1 Cucumis melo genomic chromosome, chr_7.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004146541.10.0PREDICTED: scarecrow-like protein 15 isoform X1
SwissprotO232101e-148SCL15_ARATH; Scarecrow-like protein 15
TrEMBLA0A0A0KXY20.0A0A0A0KXY2_CUCSA; Uncharacterized protein
STRINGXP_004146541.10.0(Cucumis sativus)
STRINGXP_004169023.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF59593252
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36710.11e-150GRAS family protein
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]
  4. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]