PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.201250.1
Common NameCsa_4G043840
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family GRAS
Protein Properties Length: 533aa    MW: 59269.1 Da    PI: 6.3092
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.201250.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS291.42.3e-891725313374
            GRAS   3 elLlecAeavssgdlelaqalLarlsel..aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                     e L+++A++++s+d++la+ +L+rl+++  ++++ +p++R+a++f+eAL++ l+  +++  + l++++    + +++++a+k+fs +sPi+ fsh
  Cucsa.201250.1 172 EDLIAAADCFDSNDFQLAHVILERLNQRlqSTSSTNPLHRAAFFFKEALQSLLSP-SPNRHNRLSSWP----DIVHTIKAYKAFSVISPIPMFSH 261
                     689************************98666666*******************9.444444455444....58********************* PP

            GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp..slRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrled 188
                     +t+Nqa+lea++ ++ +HiiDfdi+ G+Q++++++++ +++e+     lRiT+v+++e   + e + ++e+L +fA+ l+++f+++++  +++++
  Cucsa.201250.1 262 FTTNQALLEALNASSIIHIIDFDIGFGGQYASFMKEIVEKAESRNvvLLRITAVVPEE--FAIESRLIRENLCQFAQDLKIRFHIDLVPLRTFQT 354
                     ****************************************966554499*******65..8889999********************9999**** PP

            GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqe..adhnsesFlerflealeyysalfdsleaklpresee 281
                     l++++ ++ +gE+ a+ l+  +++ l   +s++s   ++L  v+++sP vvv+v+ +  +d +++sF + ++++le+y+ +++sl+a  ++  e+
  Cucsa.201250.1 355 LSFKSVKFMEGEKSAILLSPTIFSRL---GSINS-VASFLGDVRRVSPCVVVFVDGDgwSDSGATSFKRNLMDSLEFYALMLESLDAA-GASGEW 444
                     ***********************999...56665.667*******************77788999********************998.667799 PP

            GRAS 282 rikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                      + +E ++++++iv +v  +g++       +  Wre ++ aG+kpv+ls++a  qa++ll k++++g+++ +++++lvl+W++rpLv++SaWr
  Cucsa.201250.1 445 VRRIETFVVRPKIVAAVEGAGRM------AAPPWREVFHGAGMKPVALSQFADFQAECLLGKIQVRGFQIGKRNAELVLCWHERPLVATSAWR 531
                     99***************999998......799************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098535.583144511IPR005202Transcription factor GRAS
PfamPF035148.0E-87172531IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0030154Biological Processcell differentiation
GO:0048831Biological Processregulation of shoot system development
Sequence ? help Back to Top
Protein Sequence    Length: 533 aa     Download sequence    Send to blast
MRVPVSNNQL SLPSSNPNPN PKLHSSPSTI AFNTPTTITT ASSTTCYEPT SVLDLRRSPS  60
PVAPDNPLSS ADDRHNNHPL DWDEQALHNL DWDSIMGDLG LHDDSNSSLK NNTNHDHVPH  120
FPEFLHSQSL DHTSHLLPPD FFLSEPFSNH PPTVLQSFNS FNPNNPSLDF LEDLIAAADC  180
FDSNDFQLAH VILERLNQRL QSTSSTNPLH RAAFFFKEAL QSLLSPSPNR HNRLSSWPDI  240
VHTIKAYKAF SVISPIPMFS HFTTNQALLE ALNASSIIHI IDFDIGFGGQ YASFMKEIVE  300
KAESRNVVLL RITAVVPEEF AIESRLIREN LCQFAQDLKI RFHIDLVPLR TFQTLSFKSV  360
KFMEGEKSAI LLSPTIFSRL GSINSVASFL GDVRRVSPCV VVFVDGDGWS DSGATSFKRN  420
LMDSLEFYAL MLESLDAAGA SGEWVRRIET FVVRPKIVAA VEGAGRMAAP PWREVFHGAG  480
MKPVALSQFA DFQAECLLGK IQVRGFQIGK RNAELVLCWH ERPLVATSAW RC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A5e-2217853026377Protein SCARECROW
5b3h_D5e-2217853026377Protein SCARECROW
5hyz_A5e-2219953130375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818740.0LN681874.1 Cucumis melo genomic scaffold, anchoredscaffold00031.
GenBankLN7132610.0LN713261.1 Cucumis melo genomic chromosome, chr_7.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008453725.10.0PREDICTED: scarecrow-like protein 15
SwissprotO232101e-151SCL15_ARATH; Scarecrow-like protein 15
TrEMBLA0A0A0KUN90.0A0A0A0KUN9_CUCSA; GRAS family transcription factor
STRINGXP_004146542.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF59593252
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36710.11e-129GRAS family protein
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]
  4. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]