PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cucsa.155340.1

Common Name

Csa_1G589140

Organism

Cucumis sativus

Taxonomic ID

3659

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

bHLH

Protein Properties

Length: 382aa MW: 42089.6 Da PI: 10.2548

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.155340.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	40.2	6e-13	263	308	4	54
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 h + ErrRR+++N++f+ L++llP+ +K +K ++L+ + eY++sL Cucsa.155340.1 263 HHVISERRRREKLNDSFQALKSLLPPG-----TKKDKGSVLTTTREYMSSL 308 58899******************97.....8**************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	15.161	259	308	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.49E-12	259	313	No hit	No description
SuperFamily	SSF47459	2.09E-16	261	329	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	8.1E-17	263	326	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.4E-10	264	308	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	3.5E-14	265	314	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd14686	0.00359	302	328	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 382 aa Download sequence Send to blast
LIPGLAYKHN DPCLKLENSE LQTYASADVQ KQFYLAAGIQ TSIFLGSIHG EIELGFSNVS 60 QVDIEMIISS LVPVDVVAPK VPIMELPQPS TKSKLIPSLS SIPILNPNAL SSSSSSLRSL 120 SMDSPAESPF PTADIPILQS QLQPSSMDSI FAQARNLQFP TPEALDEAMT RTILAVLSSP 180 ACSSSSSVHP PLEKLPPSYR LNVKASAFKK FALVLTPTMR LNRNLSTRQS LLKRSLAFMT 240 NLNLMRVRER MPTTSRPTSS QLHHVISERR RREKLNDSFQ ALKSLLPPGT KKDKGSVLTT 300 TREYMSSLKA QVAELSRRNQ QLEAQLLQTT RGEFSSLTNI VIGVLEFLKQ LNNVRVVSME 360 GNTQLTPSSS SINHLTLRLI IE

Sequence ? help Back to Top

Protein Sequence Length: 382 aa Download sequence Send to blast

LIPGLAYKHN DPCLKLENSE LQTYASADVQ KQFYLAAGIQ TSIFLGSIHG EIELGFSNVS  60
QVDIEMIISS LVPVDVVAPK VPIMELPQPS TKSKLIPSLS SIPILNPNAL SSSSSSLRSL  120
SMDSPAESPF PTADIPILQS QLQPSSMDSI FAQARNLQFP TPEALDEAMT RTILAVLSSP  180
ACSSSSSVHP PLEKLPPSYR LNVKASAFKK FALVLTPTMR LNRNLSTRQS LLKRSLAFMT  240
NLNLMRVRER MPTTSRPTSS QLHHVISERR RREKLNDSFQ ALKSLLPPGT KKDKGSVLTT  300
TREYMSSLKA QVAELSRRNQ QLEAQLLQTT RGEFSSLTNI VIGVLEFLKQ LNNVRVVSME  360
GNTQLTPSSS SINHLTLRLI IE

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	267	272	ERRRRE
2	268	273	RRRREK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681806	0.0	LN681806.1 Cucumis melo genomic scaffold, anchoredscaffold00025.
GenBank	LN713256	0.0	LN713256.1 Cucumis melo genomic chromosome, chr_2.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011659993.1	0.0	PREDICTED: putative transcription factor bHLH041 isoform X2
TrEMBL	A0A0A0M202	0.0	A0A0A0M202_CUCSA; Uncharacterized protein
STRING	XP_004173552.1	0.0	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4150	33	54

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56960.1	1e-32	bHLH family protein

Link Out ? help Back to Top
Phytozome	Cucsa.155340.1

Publications ? help Back to Top
Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402]