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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cucsa.150740.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | NAC | ||||||||
Protein Properties | Length: 77aa MW: 8753.94 Da PI: 4.6474 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 54.9 | 2.9e-17 | 16 | 64 | 1 | 49 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk 49 lppGfrFhP+deelv++yL kk+ +++ + ++ + evd++k+ePwd+pk Cucsa.150740.1 16 LPPGFRFHPRDEELVCDYLMKKIGSNSSSSSSLLIEVDLNKCEPWDIPK 64 79*************************999899**************94 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 4.45E-17 | 6 | 66 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 19.596 | 16 | 76 | IPR003441 | NAC domain |
Pfam | PF02365 | 9.2E-8 | 17 | 60 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 77 aa Download sequence Send to blast |
ENNNNNNNIS MVEAKLPPGF RFHPRDEELV CDYLMKKIGS NSSSSSSLLI EVDLNKCEPW 60 DIPKVWLVVY LSQWSI* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269|PubMed:11114891}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by auxin. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681867 | 4e-45 | LN681867.1 Cucumis melo genomic scaffold, anchoredscaffold00013. | |||
GenBank | LN713261 | 4e-45 | LN713261.1 Cucumis melo genomic chromosome, chr_7. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011651529.1 | 3e-38 | PREDICTED: NAC domain-containing protein 21/22-like isoform X2 | ||||
Swissprot | Q84TE6 | 7e-24 | NAC22_ARATH; NAC domain-containing protein 21/22 | ||||
TrEMBL | A0A0A0LDG6 | 2e-36 | A0A0A0LDG6_CUCSA; Uncharacterized protein | ||||
STRING | XP_004150776.1 | 3e-37 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF21904 | 3 | 4 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G56010.2 | 2e-25 | NAC domain containing protein 1 |
Link Out ? help Back to Top | |
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Phytozome | Cucsa.150740.1 |