PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.119310.1
Common NameCsa_6G127320, LOC101212552
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family NAC
Protein Properties Length: 304aa    MW: 34937.6 Da    PI: 7.0113
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.119310.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM147.75.8e-46141442128
             NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkya..tgkrknratksgyWkatgkdkevls 94 
                      pGfrFhPt+eel+ +yLk+ v gk+ + ++vi+ ++iy+++PwdLp  +k++e+ewyfF++rd+k+    g r+nr+t  gyWkatg+d+++ls
  Cucsa.119310.1  14 LPGFRFHPTEEELLEFYLKQMVFGKRRHSFDVITFLNIYQHDPWDLPDLAKNGEREWYFFVPRDRKHGgcGGGRPNRTTGIGYWKATGSDRRILS 108
                     59************************9999*****************8889999************9955599********************99 PP

             NAM  95 k..kgelvglkktLvfykgrapkgektdWvmheyrl 128
                         ++ +gl+ktLvfykgrap+g+ktdW+m+eyrl
  Cucsa.119310.1 109 FsdPKRFIGLRKTLVFYKGRAPRGTKTDWIMNEYRL 144
                     7555667***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.18E-537163IPR003441NAC domain
PROSITE profilePS5100554.05713163IPR003441NAC domain
PfamPF023654.5E-2415144IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MADKAHHHSF HGQLPGFRFH PTEEELLEFY LKQMVFGKRR HSFDVITFLN IYQHDPWDLP  60
DLAKNGEREW YFFVPRDRKH GGCGGGRPNR TTGIGYWKAT GSDRRILSFS DPKRFIGLRK  120
TLVFYKGRAP RGTKTDWIMN EYRLPHNSSL PVMDIVLCKI YRKATSMKVL EQRAVEEETK  180
NLQINNNTTI ILTPALMSEE EQGDDQDSFC TRSIPRLNSS EVVAMKEEIS CGEEEEVDSK  240
VADVGSSSLS LSTTSIQIPK GFGMLTDLQV PKMTMDWTQD QFWNQFNSPW LLNFTTPSNI  300
LNF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A3e-451516317168Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds sequence-specific DNA motifs. Involved in stress response. Plays a positive role in drought and salt stress tolerance through the modulation of abscisic acid-mediated signaling. {ECO:0000269|PubMed:26834774}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by drought stress, salt stress and abscisic acid (ABA). {ECO:0000269|PubMed:26834774}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6819180.0LN681918.1 Cucumis melo genomic scaffold, anchoredscaffold00020.
GenBankLN7132650.0LN713265.1 Cucumis melo genomic chromosome, chr_11.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011656937.10.0PREDICTED: NAC domain-containing protein 67-like
SwissprotQ10S651e-86NAC22_ORYSJ; NAC domain-containing protein 22
TrEMBLA0A0A0KAG50.0A0A0A0KAG5_CUCSA; Uncharacterized protein
STRINGXP_008448321.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF62143251
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17040.13e-95NAC domain containing protein 36
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]
  4. Hong Y,Zhang H,Huang L,Li D,Song F
    Overexpression of a Stress-Responsive NAC Transcription Factor Gene ONAC022 Improves Drought and Salt Tolerance in Rice.
    Front Plant Sci, 2016. 7: p. 4
    [PMID:26834774]