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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cucsa.102050.16 | ||||||||
Common Name | Csa_6G489950 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | B3 | ||||||||
Protein Properties | Length: 962aa MW: 109302 Da PI: 4.9923 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 51.9 | 1.4e-16 | 15 | 105 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 ffkv++p + + + +++p f+++ +g + + t++d +g+sW ++l +k ++ ++++GWk Fv+ + Lk gDf+vF+++g+ f v Cucsa.102050.16 15 FFKVFLPGSCTLH--MSIPPAFMKHLNGT--FPEKATMQDHTGNSWCITL--EKLDDLLYFKNGWKAFVDYHSLKYGDFLVFQYHGHCLF--DV 100 7777755555544..8*******666666..6778***************..9**999**************************997777..88 PP EEE-S CS B3 95 kvfrk 99 k+f k Cucsa.102050.16 101 KIFGK 105 88876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 2.55E-23 | 11 | 108 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.1E-20 | 12 | 108 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 12.619 | 13 | 106 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.2E-16 | 15 | 106 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 3.03E-18 | 15 | 103 | No hit | No description |
Pfam | PF02362 | 1.3E-13 | 15 | 104 | IPR003340 | B3 DNA binding domain |
Pfam | PF09331 | 1.2E-29 | 639 | 771 | IPR015410 | Domain of unknown function DUF1985 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 962 aa Download sequence Send to blast |
MMSHSGIEPA SNLEFFKVFL PGSCTLHMSI PPAFMKHLNG TFPEKATMQD HTGNSWCITL 60 EKLDDLLYFK NGWKAFVDYH SLKYGDFLVF QYHGHCLFDV KIFGKNGCKK AAAAKPASSI 120 PVLETEIAEA GNSVSDSEAK VADAGNSIAN LEAMSADAGN SDSKLEVVEA KTGNAVPTLK 180 VKEEPVVEEE DVKPSISHKR KRLQDGSELD HQSKSVVPLN RGRPDNVSNS VEQAIPRGPF 240 FERTMKRWSG QILVEEPLHY MPFFGRKNFR IEPVKIFPVR TNPEVAKYFE ECNQFQEYSW 300 EMLMSHVHSL SANQELKYIQ FEHEEVDSQQ NYQYFQDDDV QDNQSEGLDM IMTDEQPISQ 360 SEEILYLEYQ PLQTDIEDNR KSANMDSTEL VENSYDIEQN NMDDTSEVGG NLCDNIKENN 420 VDTTELSGNS YDNIKENNMD TTEPGGNSCD DIKENNVDST ELGGNLCDNI KENNVDTFEL 480 SGNSYDDIEE NNMDTAELGV NSCDDIEENN VDSTEEKQSP ASVEPSRKKK KRKSASFEVQ 540 EQKEETSEID TDQDSRRGVE TRQRKKIAEQ SKEYPLLLPR SSWATTQRIN LYSKLDVISI 600 IKNTLNERQL KKFKKSCFGN FLDLKISKFS SQLFYHLIRR QCCSKNRNEL WFNLEGRIHK 660 FGMKDFALIT GLNCGELPAI DMSKIQKGKF NKRYFGGEKT IRRAKLHKVF TEMDKGRNKD 720 VVKMAKLYIL EMFILGKQIR TGINHEYTLL IDDKKQFDSY PWGRISYEIT VDFVKKSIKS 780 NDASAIGVGG FPYALLVWAY ETIPLLALNS NFLAMRISFG TPRMNNWAAG VHPEWKDLSE 840 KVFQSEAFDV QPLIATTTEM EMPYMIPFGG VKPSNEKNIS PVDQEHNSDA RTSYNKDHCN 900 WKGSQSVSKD GVENFLFTKI VNIEGILGSL VHDIDNLKSF FHKMCGTANE AADSEKMRKP 960 L* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 526 | 531 | RKKKKR |
2 | 526 | 532 | RKKKKRK |
3 | 527 | 532 | KKKKRK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681875 | 0.0 | LN681875.1 Cucumis melo genomic scaffold, anchoredscaffold00007. | |||
GenBank | LN713262 | 0.0 | LN713262.1 Cucumis melo genomic chromosome, chr_8. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011657834.1 | 0.0 | PREDICTED: uncharacterized protein LOC101221625 isoform X11 | ||||
TrEMBL | A0A0A0KI50 | 0.0 | A0A0A0KI50_CUCSA; Uncharacterized protein | ||||
STRING | XP_008440207.1 | 0.0 | (Cucumis melo) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G66980.1 | 3e-20 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Cucsa.102050.16 |
Publications ? help Back to Top | |||
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