PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.099390.1
Common NameCsa_7G020910, LOC101206181
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family NAC
Protein Properties Length: 284aa    MW: 32565.1 Da    PI: 6.3773
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.099390.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM145.23.5e-4581343128
             NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.. 95 
                     pGfrFhPt+eel+++yLk+ v+gk+l++ ++i  +++y+++PwdLp  +  +e+ewyfF++rd+k   + r+nr+tk+gyWkatg+d++++s   
  Cucsa.099390.1   8 PGFRFHPTEEELLNFYLKNVVSGKRLQF-DHIGILNLYQHDPWDLPGLAGIGEREWYFFVPRDRKLGGSGRPNRTTKRGYWKATGSDRKIVSLsd 101
                     9**************************9.89***************8778899*************************************99766 PP

             NAM  96 kgelvglkktLvfykgrapkgektdWvmheyrl 128
                      ++l+gl+ktLvfy gra +g+ktdW+m+eyr+
  Cucsa.099390.1 102 PKRLIGLRKTLVFYLGRATRGSKTDWIMNEYRF 134
                     7788***************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100551.5916152IPR003441NAC domain
SuperFamilySSF1019411.14E-537152IPR003441NAC domain
PfamPF023652.7E-258133IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009965Biological Processleaf morphogenesis
GO:0010200Biological Processresponse to chitin
GO:0045792Biological Processnegative regulation of cell size
GO:0048281Biological Processinflorescence morphogenesis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
MAHETDLPGF RFHPTEEELL NFYLKNVVSG KRLQFDHIGI LNLYQHDPWD LPGLAGIGER  60
EWYFFVPRDR KLGGSGRPNR TTKRGYWKAT GSDRKIVSLS DPKRLIGLRK TLVFYLGRAT  120
RGSKTDWIMN EYRFPDNSPL PKEMVLCKIY RKATSLKVLE QRAAKEEEDA KPFQASYSPP  180
ASPFETISFC SQQETMVSSV TPPTHEVLNK EVEVATMVDE ILEDKAVEPQ ISSTSLQIPS  240
ELEKLTELQV PKLDMDWSQD LFWTQFNSPW LQTLTPFASM LNF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A6e-43815217168Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds sequence-specific DNA motifs. Involved in stress response. Plays a positive role in drought and salt stress tolerance through the modulation of abscisic acid-mediated signaling. {ECO:0000269|PubMed:26834774}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by drought stress, salt stress and abscisic acid (ABA). {ECO:0000269|PubMed:26834774}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6817980.0LN681798.1 Cucumis melo genomic scaffold, anchoredscaffold00019.
GenBankLN7132550.0LN713255.1 Cucumis melo genomic chromosome, chr_1.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004144879.10.0PREDICTED: protein FEZ-like
SwissprotQ10S651e-93NAC22_ORYSJ; NAC domain-containing protein 22
TrEMBLA0A0A0K4U70.0A0A0A0K4U7_CUCSA; Uncharacterized protein
STRINGXP_004144879.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF62143251
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17040.11e-109NAC domain containing protein 36
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]
  4. Hong Y,Zhang H,Huang L,Li D,Song F
    Overexpression of a Stress-Responsive NAC Transcription Factor Gene ONAC022 Improves Drought and Salt Tolerance in Rice.
    Front Plant Sci, 2016. 7: p. 4
    [PMID:26834774]