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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cucsa.096930.1 | ||||||||
Common Name | Csa_4G001970, LOC101203357 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | ERF | ||||||||
Protein Properties | Length: 273aa MW: 30868.3 Da PI: 5.1247 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 59.4 | 8.3e-19 | 67 | 115 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+G+r+++ +g+W+AeIrdp++ r++lg+f taeeAa+a+++ ++k++g Cucsa.096930.1 67 YRGIRQRP-WGKWAAEIRDPRK---GIRVWLGTFNTAEEAARAYDREARKIRG 115 9*******.**********954...3************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 3.6E-32 | 66 | 124 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.0E-37 | 66 | 129 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.67 | 66 | 123 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.81E-22 | 66 | 124 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 9.19E-34 | 67 | 124 | No hit | No description |
PRINTS | PR00367 | 9.1E-12 | 67 | 78 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.1E-11 | 67 | 115 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 9.1E-12 | 89 | 105 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 273 aa Download sequence Send to blast |
MCGGAIIADF IPRRDGQRVT ASDIWPNSSL FHFNKIPSNQ VSTPLKRTPL PSSEASKPKK 60 RQRKNLYRGI RQRPWGKWAA EIRDPRKGIR VWLGTFNTAE EAARAYDREA RKIRGKKAKV 120 NFPNEDDTYS IQAPIPQFHP HLYTVPENSE FPYDLNQIGD FTSTHFPVAI EEQSGSGSED 180 SYPPPERFGV KESSEEKPEQ KVSVIAAVEE ENEVQKLSEE LMAYENFMKF YQIPYLDGQS 240 TVTNPAEEQV VGDLWSFDDE DGLHGSVSSS EL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 5e-22 | 67 | 123 | 3 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB125976 | 0.0 | AB125976.1 Cucumis melo CMe-ERF2 mRNA for ERF-like protein, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004152238.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor ERF073-like | ||||
TrEMBL | A0A0A0KT75 | 0.0 | A0A0A0KT75_CUCSA; Uncharacterized protein | ||||
STRING | XP_004152238.1 | 0.0 | (Cucumis sativus) | ||||
STRING | XP_004156828.1 | 0.0 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6771 | 34 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G16770.1 | 3e-37 | ethylene-responsive element binding protein |
Link Out ? help Back to Top | |
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Phytozome | Cucsa.096930.1 |
Entrez Gene | 101203357 |
Publications ? help Back to Top | |||
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