PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cucsa.083530.1

Common Name

Csa_6G452770

Organism

Cucumis sativus

Taxonomic ID

3659

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

NAC

Protein Properties

Length: 266aa MW: 30608.2 Da PI: 6.2565

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.083530.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	142.9	1.9e-44	6	142	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk....leleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWkatg 87 lppGfrF Pt+eelv++yL +k+eg + ++++i+ +diy+++PwdLp+ +k +e++w+fF++r++++a+g r++r+t+sgyWkatg Cucsa.083530.1 6 LPPGFRFYPTEEELVSFYLYHKLEGGRqyfnGVVDQIIPILDIYHFNPWDLPQfageVCKRDEEQWFFFIPRQESEARGGRPKRVTSSGYWKATG 100 79*********************9977643334579999*******657765566888*************************** PP NAM 88 kdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 + + v+s+ +++ +g+k+++vfy+grapkg+kt+W m+ey+l Cucsa.083530.1 101 SPTYVYSSnNHRSIGIKRSMVFYNGRAPKGTKTQWKMNEYKL 142 **9867778*************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.12E-48	3	166	IPR003441	NAC domain
PROSITE profile	PS51005	50.708	6	166	IPR003441	NAC domain
Pfam	PF02365	5.8E-23	7	142	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 266 aa Download sequence Send to blast
MEDYTLPPGF RFYPTEEELV SFYLYHKLEG GRQYFNGVVD QIIPILDIYH FNPWDLPQFA 60 GEVCKRDEEQ WFFFIPRQES EARGGRPKRV TSSGYWKATG SPTYVYSSNN HRSIGIKRSM 120 VFYNGRAPKG TKTQWKMNEY KLVPGEQPFP ASTTIPKLSL CRIYKKSKTV RAFDRRPPPP 180 QVEAPIPTEL RATTSQHNDV GDQFVDDDQK LSNPLLMTTE RPCSPESSSS GDDHGESSTN 240 DNNGQLKMEV DNNELVWDWN HLNWL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	9e-39	1	171	12	170	NO APICAL MERISTEM PROTEIN
1ut4_B	9e-39	1	171	12	170	NO APICAL MERISTEM PROTEIN
1ut7_A	9e-39	1	171	12	170	NO APICAL MERISTEM PROTEIN
1ut7_B	9e-39	1	171	12	170	NO APICAL MERISTEM PROTEIN
3swm_A	9e-39	1	171	15	173	NAC domain-containing protein 19
3swm_B	9e-39	1	171	15	173	NAC domain-containing protein 19
3swm_C	9e-39	1	171	15	173	NAC domain-containing protein 19
3swm_D	9e-39	1	171	15	173	NAC domain-containing protein 19
3swp_A	9e-39	1	171	15	173	NAC domain-containing protein 19
3swp_B	9e-39	1	171	15	173	NAC domain-containing protein 19
3swp_C	9e-39	1	171	15	173	NAC domain-containing protein 19
3swp_D	9e-39	1	171	15	173	NAC domain-containing protein 19
4dul_A	9e-39	1	171	12	170	NAC domain-containing protein 19
4dul_B	9e-39	1	171	12	170	NAC domain-containing protein 19
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681876	1e-131	LN681876.1 Cucumis melo genomic scaffold, anchoredscaffold00068.
GenBank	LN713262	1e-131	LN713262.1 Cucumis melo genomic chromosome, chr_8.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004143387.1	0.0	PREDICTED: NAC domain-containing protein 90-like
TrEMBL	A0A0A0KKJ2	0.0	A0A0A0KKJ2_CUCSA; Uncharacterized protein
STRING	XP_004143387.1	0.0	(Cucumis sativus)
STRING	XP_004171607.1	0.0	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF871	34	123

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G44350.2	1e-65	NAC domain containing protein 61

Link Out ? help Back to Top
Phytozome	Cucsa.083530.1

Publications ? help Back to Top
Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402]