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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cucsa.064390.1 | ||||||||
Common Name | Csa_4G378010, LOC101214560 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | ERF | ||||||||
Protein Properties | Length: 359aa MW: 39338.7 Da PI: 6.8551 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 65.2 | 1.3e-20 | 174 | 223 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr+++ +g+WvAeIr p++ r+r +lg+f+taeeAa a+++a+ kl+g Cucsa.064390.1 174 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDTAEEAALAYDKAAFKLRG 223 59******9.**********955...5*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.96E-35 | 173 | 233 | No hit | No description |
SuperFamily | SSF54171 | 4.64E-23 | 174 | 231 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 5.6E-33 | 174 | 232 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.4E-40 | 174 | 237 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.591 | 174 | 231 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.6E-14 | 175 | 223 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.5E-11 | 175 | 186 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.5E-11 | 197 | 213 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 359 aa Download sequence Send to blast |
MEAAMDFYNE GSQTDHFGGE LMEAIVPFIK VASSSSSSLS TFPSSSSPTP YLSPHYSSSF 60 NTHLNFSHSA SQQSNLYPNG CSTSMNPVFS DGFSTQNLIG FEQPVTIGPH QLSSSQIPHS 120 QPQNNLLQNQ TPLAFAWGQQ NHQPPSSSEQ PPSFLAPKPI PMKQVGSSSK PTKLYRGVRQ 180 RHWGKWVAEI RLPRNRTRLW LGTFDTAEEA ALAYDKAAFK LRGDSARLNF PNLKHQGSCV 240 EGEFGEYRPL HSSVAAKLQA ICDNLAKPQK QGNSKKPVTA AKKSKSQSCS MAEETAAVKV 300 ENSSSRAVTE SDGSEASSPL SDLTFPDFTE MLWDQSQPWE NSMLEKYPSE IDWASILP* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 7e-22 | 173 | 231 | 1 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681867 | 0.0 | LN681867.1 Cucumis melo genomic scaffold, anchoredscaffold00013. | |||
GenBank | LN713261 | 0.0 | LN713261.1 Cucumis melo genomic chromosome, chr_7. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004142609.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor RAP2-13-like | ||||
Swissprot | Q8H1E4 | 3e-77 | RAP24_ARATH; Ethylene-responsive transcription factor RAP2-4 | ||||
TrEMBL | A0A0A0L0N8 | 0.0 | A0A0A0L0N8_CUCSA; Uncharacterized protein | ||||
STRING | XP_004142609.1 | 0.0 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1057 | 32 | 109 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G78080.1 | 2e-62 | related to AP2 4 |
Link Out ? help Back to Top | |
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Phytozome | Cucsa.064390.1 |
Entrez Gene | 101214560 |