PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.051690.2
Common NameCsa_6G294440, LOC101211039
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family NF-YC
Protein Properties Length: 191aa    MW: 21315 Da    PI: 10.1756
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.051690.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC28.53.3e-091151771072
           NF-YC  10 iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrr 72 
                      e++++ k  ++P+ rikki++ ++   +i  ea  l+ ka e+f++++   ++  + + +++
  Cucsa.051690.2 115 AEEEAEEKIYKFPMHRIKKIMRDENSDLRINQEALFLVNKASEMFLVQFCKDAYACCAQDRKK 177
                     57777888999***********9999999******************9988777665555554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471131.08E-1593186IPR009072Histone-fold
PfamPF008086.1E-15125184IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.104.8E-16126185IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 191 aa     Download sequence    Send to blast
MASSKKSSTE AKSKEVGTSK PSPKAKTHNN ARNSDKDISK KKKKKKKISI SISTNNGSVK  60
DNHALAVSAP GASASEDADA ADEDKAETTS RKSNTSKSKK VKRNHAKEED NRYAAEEEAE  120
EKIYKFPMHR IKKIMRDENS DLRINQEALF LVNKASEMFL VQFCKDAYAC CAQDRKKSLA  180
YKHLFFYNES *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14046KKKKKKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6819220.0LN681922.1 Cucumis melo genomic scaffold, anchoredscaffold00082.
GenBankLN7132650.0LN713265.1 Cucumis melo genomic chromosome, chr_11.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004149539.21e-129PREDICTED: chromatin accessibility complex protein 1
TrEMBLA0A0A0KCQ21e-127A0A0A0KCQ2_CUCSA; Uncharacterized protein
STRINGXP_004170032.11e-128(Cucumis sativus)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07980.12e-18nuclear factor Y, subunit C10
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]