PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cucsa.050010.1

Common Name

Csa_7G429510, LOC101208443

Organism

Cucumis sativus

Taxonomic ID

3659

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

MYB_related

Protein Properties

Length: 704aa MW: 77478.3 Da PI: 10.4058

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.050010.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	28.3	4.2e-09	10	61	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.......TTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmg.......kgRtlkqcksrwqky 47 W t E++ll++avk++G ++W++++ +++ + t+ +c +++q++ Cucsa.050010.1 10 TWGTLEELLLACAVKRHGFKDWNSVSMELQnrsslppLLTTARNCELKFQDL 61 699***************************7777777666777777777766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00717	2.9E-4	7	64	IPR001005	SANT/Myb domain
CDD	cd00167	2.75E-5	10	62	No hit	No description
Pfam	PF00249	5.8E-8	10	61	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.20.920.10	4.6E-13	311	429	IPR001487	Bromodomain
SMART	SM00297	6.3E-10	321	430	IPR001487	Bromodomain
SuperFamily	SSF47370	9.16E-14	326	431	IPR001487	Bromodomain
CDD	cd04369	1.57E-11	330	425	No hit	No description
Pfam	PF00439	3.1E-9	334	415	IPR001487	Bromodomain
PROSITE profile	PS50014	10.65	340	411	IPR001487	Bromodomain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 704 aa Download sequence Send to blast
MADSEQITAT WGTLEELLLA CAVKRHGFKD WNSVSMELQN RSSLPPLLTT ARNCELKFQD 60 LKRRFTSFQN DAVLNHNASG IADKLDTALP WVDELRKLRV AELRREVQRY DVSINSLQLK 120 VKKLEEEREQ GVNDREASTG KPDLKTESRE RRSENDKKHF GEPDHRSGPN GTVTKPPAVP 180 GEDSDRENFS VNQSNSTGSK SGNRKSTAEI AKSETKPDFA GSYRPEQNRG TSEPAGPQSD 240 DGSTDTVVKN PTCDISETKK KETQRVDDSS ELADSEAQSH GGGTTTRESS EVQSSASLTG 300 RMKSKRLLRK EISGGSSGNE PRRSVGIKSR RFDEVLQLIR AHKHGSLFES RLQSQETEEY 360 KGMVRQHLDL EIVQSKITSG SYSSSNLAFY RDLLLLFNNM VTFFPKSSKE AVAACELRLL 420 ISNEMKKSLR IAQTDPLPEV VDSSPTIPSR SKGPDLEGSQ SLLAKQKSSV PIVVCRKRSK 480 ISNPSTTGVG EKGERSNDDE KPAADLKSSI KTASNLVEDE DTTKDSKVKE KPTTGARSMR 540 RSNDSATNSS GPSSSKKQNI TSRWKPSSAN ETEIPTPDKK KSETVALEKK RSAADFLKRI 600 KQNSPAETTK RNGRGGSSGG VSNATPEQKK GSSKNDKGKE RVSTTMKQSN DRKRPKEDAS 660 PSKRSVGRPP KKAAEAEPPT PIKRAREGGG KEPLKRPRKK SKR*

Sequence ? help Back to Top

Protein Sequence Length: 704 aa Download sequence Send to blast

MADSEQITAT WGTLEELLLA CAVKRHGFKD WNSVSMELQN RSSLPPLLTT ARNCELKFQD  60
LKRRFTSFQN DAVLNHNASG IADKLDTALP WVDELRKLRV AELRREVQRY DVSINSLQLK  120
VKKLEEEREQ GVNDREASTG KPDLKTESRE RRSENDKKHF GEPDHRSGPN GTVTKPPAVP  180
GEDSDRENFS VNQSNSTGSK SGNRKSTAEI AKSETKPDFA GSYRPEQNRG TSEPAGPQSD  240
DGSTDTVVKN PTCDISETKK KETQRVDDSS ELADSEAQSH GGGTTTRESS EVQSSASLTG  300
RMKSKRLLRK EISGGSSGNE PRRSVGIKSR RFDEVLQLIR AHKHGSLFES RLQSQETEEY  360
KGMVRQHLDL EIVQSKITSG SYSSSNLAFY RDLLLLFNNM VTFFPKSSKE AVAACELRLL  420
ISNEMKKSLR IAQTDPLPEV VDSSPTIPSR SKGPDLEGSQ SLLAKQKSSV PIVVCRKRSK  480
ISNPSTTGVG EKGERSNDDE KPAADLKSSI KTASNLVEDE DTTKDSKVKE KPTTGARSMR  540
RSNDSATNSS GPSSSKKQNI TSRWKPSSAN ETEIPTPDKK KSETVALEKK RSAADFLKRI  600
KQNSPAETTK RNGRGGSSGG VSNATPEQKK GSSKNDKGKE RVSTTMKQSN DRKRPKEDAS  660
PSKRSVGRPP KKAAEAEPPT PIKRAREGGG KEPLKRPRKK SKR*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	694	702	KRPRKKSKR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681804	0.0	LN681804.1 Cucumis melo genomic scaffold, anchoredscaffold00060.
GenBank	LN713255	0.0	LN713255.1 Cucumis melo genomic chromosome, chr_1.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004136109.1	0.0	PREDICTED: uncharacterized protein LOC101208443
TrEMBL	A0A0A0K641	0.0	A0A0A0K641_CUCSA; Uncharacterized protein
STRING	XP_004136109.1	0.0	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1870	29	72

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G44430.1	1e-104	DNA-binding bromodomain-containing protein

Link Out ? help Back to Top
Phytozome	Cucsa.050010.1
Entrez Gene	101208443

Publications ? help Back to Top
Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402]