PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

M-type_MADS

Protein Properties

Length: 64aa MW: 6972.15 Da PI: 10.8965

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa20g019200.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	97.3	6.5e-31	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien rqvtfskRr+g+lKKA+ELSvLCdaevavi+fs++gkl+e+ss Csa20g019200.1 9 KRIENANSRQVTFSKRRAGLLKKAHELSVLCDAEVAVIVFSKSGKLFEFSS 59 79***********************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	3.7E-43	1	60	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	32.842	1	61	IPR002100	Transcription factor, MADS-box
CDD	cd00265	1.44E-38	2	62	No hit	No description
SuperFamily	SSF55455	1.7E-30	2	61	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.8E-31	3	23	IPR002100	Transcription factor, MADS-box
PROSITE pattern	PS00350	0	3	57	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	4.4E-28	10	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.8E-31	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.8E-31	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 64 aa Download sequence Send to blast
MGRGKIEIKR IENANSRQVT FSKRRAGLLK KAHELSVLCD AEVAVIVFSK SGKLFEFSSS 60 GVF*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6byy_A	4e-22	1	62	1	62	MEF2 CHIMERA
6byy_B	4e-22	1	62	1	62	MEF2 CHIMERA
6byy_C	4e-22	1	62	1	62	MEF2 CHIMERA
6byy_D	4e-22	1	62	1	62	MEF2 CHIMERA
6bz1_A	4e-22	1	62	1	62	MEF2 CHIMERA
6bz1_B	4e-22	1	62	1	62	MEF2 CHIMERA
6bz1_C	4e-22	1	62	1	62	MEF2 CHIMERA
6bz1_D	4e-22	1	62	1	62	MEF2 CHIMERA
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa20g019200.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB005230	6e-59	AB005230.2 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MAC12.
GenBank	ATU22528	6e-59	U22528.1 Arabidopsis thaliana AGL15 gene, complete cds.
GenBank	CP002688	6e-59	CP002688.1 Arabidopsis thaliana chromosome 5 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006289158.1	3e-35	agamous-like MADS-box protein AGL15 isoform X3
Refseq	XP_010419983.1	4e-35	PREDICTED: agamous-like MADS-box protein AGL15 isoform X1
Refseq	XP_023636657.1	3e-35	agamous-like MADS-box protein AGL15 isoform X1
Refseq	XP_023636658.1	3e-35	agamous-like MADS-box protein AGL15 isoform X2
Swissprot	Q39295	7e-35	AGL15_BRANA; Agamous-like MADS-box protein AGL15
TrEMBL	R0FJ29	7e-34	R0FJ29_9BRAS; Uncharacterized protein
STRING	Cagra.5588s0006.1.p	1e-34	(Capsella grandiflora)
STRING	XP_006289158.1	1e-34	(Capsella rubella)
STRING	XP_010419983.1	1e-34	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM78	28	413

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G13790.1	3e-36	AGAMOUS-like 15