PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa19g011480.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family GeBP
Protein Properties Length: 364aa    MW: 39899.5 Da    PI: 6.342
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa19g011480.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573100.61.4e-3191181398
          DUF573   3 fqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWg 97 
                     ++rlws++De+v+L+G++d+k+ktg ++ +d  af+ef+k+ i+  vsk+ql++Kir+LK Kf++ + k     +psf++++d++if+ls+ iWg
  Csa19g011480.1  91 SKRLWSKDDELVILKGIVDYKTKTGLDYRSDSAAFFEFIKDGIDGIVSKDQLMNKIRKLKSKFRDSSVK-----NPSFTNPQDSEIFDLSMAIWG 180
                     79**************************************************************99888.....9*******************9 PP

          DUF573  98 s 98 
                     +
  Csa19g011480.1 181 K 181
                     5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045049.9E-2592180IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MLNKKRRCSG GDGGFSDTYT CDLELRVKNS NGFLPPSPPD SPVLNSPENL DSTPTAAAAA  60
AAAAFDETPT LSKTRKKRKA TLSPSYAPPD SKRLWSKDDE LVILKGIVDY KTKTGLDYRS  120
DSAAFFEFIK DGIDGIVSKD QLMNKIRKLK SKFRDSSVKN PSFTNPQDSE IFDLSMAIWG  180
KVKPGCVDDR AKRTRSKVQA FVEHEVVTNG EPENDDGLAE GNSFDKNANK NTENENGGKR  240
SEEDGAMTNG KPENDNGAAK GGSCVDKLPT ENVDKRVEKE NGEEEDGAAD DELCALQDAL  300
ETTVFQHIGN YAQKQMLQKL KNLKAKERKE LSSEWKSLLA QEALLKSKKY SFTAKLANAA  360
FHN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa19g011480.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010486340.10.0PREDICTED: GLABROUS1 enhancer-binding protein isoform X1
TrEMBLD7L7072e-69D7L707_ARALL; Uncharacterized protein
STRINGXP_010486340.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1743558
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00270.17e-34DNA-binding storekeeper protein-related transcriptional regulator