PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa19g011480.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | GeBP | ||||||||
Protein Properties | Length: 364aa MW: 39899.5 Da PI: 6.342 | ||||||||
Description | GeBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF573 | 100.6 | 1.4e-31 | 91 | 181 | 3 | 98 |
DUF573 3 fqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWg 97 ++rlws++De+v+L+G++d+k+ktg ++ +d af+ef+k+ i+ vsk+ql++Kir+LK Kf++ + k +psf++++d++if+ls+ iWg Csa19g011480.1 91 SKRLWSKDDELVILKGIVDYKTKTGLDYRSDSAAFFEFIKDGIDGIVSKDQLMNKIRKLKSKFRDSSVK-----NPSFTNPQDSEIFDLSMAIWG 180 79**************************************************************99888.....9*******************9 PP DUF573 98 s 98 + Csa19g011480.1 181 K 181 5 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04504 | 9.9E-25 | 92 | 180 | IPR007592 | Protein of unknown function DUF573 |
Sequence ? help Back to Top |
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Protein Sequence Length: 364 aa Download sequence Send to blast |
MLNKKRRCSG GDGGFSDTYT CDLELRVKNS NGFLPPSPPD SPVLNSPENL DSTPTAAAAA 60 AAAAFDETPT LSKTRKKRKA TLSPSYAPPD SKRLWSKDDE LVILKGIVDY KTKTGLDYRS 120 DSAAFFEFIK DGIDGIVSKD QLMNKIRKLK SKFRDSSVKN PSFTNPQDSE IFDLSMAIWG 180 KVKPGCVDDR AKRTRSKVQA FVEHEVVTNG EPENDDGLAE GNSFDKNANK NTENENGGKR 240 SEEDGAMTNG KPENDNGAAK GGSCVDKLPT ENVDKRVEKE NGEEEDGAAD DELCALQDAL 300 ETTVFQHIGN YAQKQMLQKL KNLKAKERKE LSSEWKSLLA QEALLKSKKY SFTAKLANAA 360 FHN* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa19g011480.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010486340.1 | 0.0 | PREDICTED: GLABROUS1 enhancer-binding protein isoform X1 | ||||
TrEMBL | D7L707 | 2e-69 | D7L707_ARALL; Uncharacterized protein | ||||
STRING | XP_010486340.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM17435 | 5 | 8 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00270.1 | 7e-34 | DNA-binding storekeeper protein-related transcriptional regulator |