PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa19g007710.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

MYB_related

Protein Properties

Length: 997aa MW: 111344 Da PI: 9.7969

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa19g007710.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	23.3	1.5e-07	44	72	3	32
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmg 32 WT E e+++da +++G + Wk++a+ + Csa19g007710.1 44 QWTRKELERFYDAYRKHGQE-WKKVAAAVR 72 6*****************.***9876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.17E-6	43	90	IPR009057	Homeodomain-like
Pfam	PF00249	7.1E-6	44	81	IPR001005	SANT/Myb domain
Pfam	PF06584	3.7E-30	635	735	IPR033471	DIRP domain
SMART	SM01135	2.3E-55	635	736	IPR033471	DIRP domain
SMART	SM00333	16	722	773	IPR002999	Tudor domain
SMART	SM00333	0.0056	774	831	IPR002999	Tudor domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 997 aa Download sequence Send to blast
MAPVRKSRSV NKRFTNETSA GKDAGNSRKN KQRKKKLSDK LGPQWTRKEL ERFYDAYRKH 60 GQEWKKVAAA VRHSRSIDMV EALFNMNRAY LSLPEGTASV AGLIAMMTDH YSVMEGSGSE 120 GEGHDASEVP RKQQKRKRAK PQLSDSREEV DIQHSVASTD GCLTFLKQAR ANGTQRRATG 180 KRTPRVPVQT SHMGDDREGS TPPNKRARKQ FDANDDVAHF LALALTDASR RGGSSKVSES 240 PNRRTELSDS TPIKSWGNMS RTRKSQSKHC DNSIFKEWMG SSQERKLESD KDTALLMDME 300 GVSEMEAPPK PKRFYKKKVK VEVEEAEGND SDDNGECSAT EGIRIQSQRR KAAIEASRGK 360 HSPRSTKRKD KKLTSGDGFD ALQELAELSA LLESGPESSA RLKEERTEYD MDEKSSTPEA 420 TSSSSHGEKA NAEPDDSLLH AISSAENTNK RKPKPSRQAS TDCDAVPTEK LQSQTSGSLR 480 RKRKPKVLGD EAPADFSQNK SINKKELHQD ENNMKSFVRT KRAGQGPAQS KQLKTVQALE 540 ESATTSDKNR PVMDVIASTK EISDSGPASV SQKPPNKRKI SLKKSLQERA KSSETIHKAS 600 RSSRTLSVQE FFLKDKLSTS LSYPLARRRC IFEWFYSAID HPWFAKKEFA DYLTHVGLGH 660 IPRLTRLEWS VVKSSLGGPR RFSEKFLQEE KEKLKQYRES VRKHYTALRT GAREGLPTDL 720 ARPLSVGNRV IAIHPKTREI HDGKILTVDH NKCNVLFDDL GVELVXGLPT DLARPLSVGN 780 RVIAIHPKTR EIHDGKILTV DHNKCNVLFD DLGVELVMDI DCMPSNHLEY MPEGLRRQID 840 KCLSMKKEAE SGNSNLGVSV IFPPCGPENV SFPMNPPLNQ FKHNEHVNGS IDPNQNHNPS 900 PSDASDPMAN NDFNSQDGSE KNEAQIPSEL ITSCVATWLM IQMCTERQYP PADVAQLIDA 960 AFTSLQPRCP QNLPIYREIQ TCMGRIKTQI LALVPT*

Sequence ? help Back to Top

Protein Sequence Length: 997 aa Download sequence Send to blast

MAPVRKSRSV NKRFTNETSA GKDAGNSRKN KQRKKKLSDK LGPQWTRKEL ERFYDAYRKH  60
GQEWKKVAAA VRHSRSIDMV EALFNMNRAY LSLPEGTASV AGLIAMMTDH YSVMEGSGSE  120
GEGHDASEVP RKQQKRKRAK PQLSDSREEV DIQHSVASTD GCLTFLKQAR ANGTQRRATG  180
KRTPRVPVQT SHMGDDREGS TPPNKRARKQ FDANDDVAHF LALALTDASR RGGSSKVSES  240
PNRRTELSDS TPIKSWGNMS RTRKSQSKHC DNSIFKEWMG SSQERKLESD KDTALLMDME  300
GVSEMEAPPK PKRFYKKKVK VEVEEAEGND SDDNGECSAT EGIRIQSQRR KAAIEASRGK  360
HSPRSTKRKD KKLTSGDGFD ALQELAELSA LLESGPESSA RLKEERTEYD MDEKSSTPEA  420
TSSSSHGEKA NAEPDDSLLH AISSAENTNK RKPKPSRQAS TDCDAVPTEK LQSQTSGSLR  480
RKRKPKVLGD EAPADFSQNK SINKKELHQD ENNMKSFVRT KRAGQGPAQS KQLKTVQALE  540
ESATTSDKNR PVMDVIASTK EISDSGPASV SQKPPNKRKI SLKKSLQERA KSSETIHKAS  600
RSSRTLSVQE FFLKDKLSTS LSYPLARRRC IFEWFYSAID HPWFAKKEFA DYLTHVGLGH  660
IPRLTRLEWS VVKSSLGGPR RFSEKFLQEE KEKLKQYRES VRKHYTALRT GAREGLPTDL  720
ARPLSVGNRV IAIHPKTREI HDGKILTVDH NKCNVLFDDL GVELVXGLPT DLARPLSVGN  780
RVIAIHPKTR EIHDGKILTV DHNKCNVLFD DLGVELVMDI DCMPSNHLEY MPEGLRRQID  840
KCLSMKKEAE SGNSNLGVSV IFPPCGPENV SFPMNPPLNQ FKHNEHVNGS IDPNQNHNPS  900
PSDASDPMAN NDFNSQDGSE KNEAQIPSEL ITSCVATWLM IQMCTERQYP PADVAQLIDA  960
AFTSLQPRCP QNLPIYREIQ TCMGRIKTQI LALVPT*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	133	140	QKRKRAKP
2	478	484	LRRKRKP

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa19g007710.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AJ583496	0.0	AJ583496.1 Arabidopsis thaliana mRNA for Arabidopsis always early 2 protein (Ataly2 gene).

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010485979.1	0.0	PREDICTED: LOW QUALITY PROTEIN: protein ALWAYS EARLY 2-like
Swissprot	Q6A333	0.0	ALY2_ARATH; Protein ALWAYS EARLY 2
TrEMBL	R0HJB2	0.0	R0HJB2_9BRAS; Uncharacterized protein
STRING	XP_010485979.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2962	22	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21430.2	5e-59	DNA binding

Publications ? help Back to Top
Pfaff C, et al. ALY RNA-Binding Proteins Are Required for Nucleocytosolic mRNA Transport and Modulate Plant Growth and Development. Plant Physiol., 2018. 177(1): p. 226-240 [PMID:29540591]