PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa18g022790.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

TCP

Protein Properties

Length: 311aa MW: 33584 Da PI: 7.5489

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa18g022790.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	115.4	7.6e-36	65	137	3	74
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.e 74 +k+ +++++hTkv+gR+RR+R++a caar+F+L++eLG+++d++ti WLl+ ++pai+e+tgt++ +a ++ Csa18g022790.1 65 KKRLPTKDRHTKVEGRGRRIRMPAGCAARIFQLTRELGHKSDGETIRWLLERSEPAIIEATGTGTVPAIAVsV 137 67889**********************************************************8888844421 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	3.3E-29	70	146	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	27.853	70	124	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 311 aa Download sequence Send to blast
MESNREGKAI REIDENVDQV VTMTNLFDPD PKTNPGLLMK KEQVRFLQPS TTMMMSNSLE 60 PAPKKKRLPT KDRHTKVEGR GRRIRMPAGC AARIFQLTRE LGHKSDGETI RWLLERSEPA 120 IIEATGTGTV PAIAVSVNGT LKIPTTSPND GDGDLMKRRK RNCTNDFVNV NEHDSCHSSV 180 TSGLAPITAS NYGVNIMNVN TQGLVPFWPM GMGIGMGTAF VTSDPNQMGQ MWAIPTVATA 240 PFLNLGTTPV SSYVSDASLV AEPHMETSGG EGGAAQSLRD FSLEIYDKKE LQFLGGSGNS 300 SPSSSCHNKT *

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa18g022790.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010482537.1	0.0	PREDICTED: transcription factor TCP19-like
Swissprot	Q9LT89	1e-145	TCP19_ARATH; Transcription factor TCP19
TrEMBL	R0EXS1	1e-170	R0EXS1_9BRAS; Uncharacterized protein
TrEMBL	R0GMZ1	1e-169	R0GMZ1_9BRAS; Uncharacterized protein (Fragment)
STRING	XP_010482537.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM12583	25	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G51910.2	1e-147	TCP family protein