PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa17g089940.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | AP2 | ||||||||
Protein Properties | Length: 497aa MW: 54393.6 Da PI: 5.7046 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 47.3 | 5.2e-15 | 218 | 267 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GV+++++ grW A+I + +k +lg+f t+eeAa+a++ a+ k++g Csa17g089940.1 218 YRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTEEEAAEAYDIAAIKFRG 267 9***************988532...5************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 7.19E-18 | 216 | 276 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 5.76E-25 | 216 | 277 | No hit | No description |
SMART | SM00380 | 1.5E-32 | 217 | 281 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.506 | 217 | 275 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.9E-18 | 217 | 275 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.3E-9 | 218 | 267 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 497 aa Download sequence Send to blast |
MNSNNWLGFP LSPTHSSLPP HIHSSQNSHF NLGLVNDNMD NPFQNQEWNM INPHSGGGQG 60 GEIPKVADFL GVNKSDNHQP DHNLVPYNDI HQTNDSDYYF QTNSLLPTVV TCASNTPNNY 120 ELQESAHNLQ SLTLSMGSTG ADVAAAATVK ASPDTDGPVD MKLIFGTIAV EEKDNQGKED 180 KITSYEKEVE EMKHMTRQEF VASIRRKSSG FSRGASMYRG VTRHHQHGRW QARIGRVAGN 240 KDLYLGTFST EEEAAEAYDI AAIKFRGLNA VTNFEINRYD VKAILESNTL PIGGGAAKRL 300 KEAQALESSR KREEMIAIGS NFHQYGAGSG STSVASSSWL QLQPYPLSIQ QPFEHLHHQP 360 LLTLQNNNDM SQYNTSAHDS YSYIQTQLHL HQQQTNNYMQ SSGHNSQLYN AYLQSNPGLL 420 HGFISDNNNT LGFLGNNGIG IGSSSTVGSS AEEEFPDVKV DYDMPPSGGA TGYGGWSTGE 480 SVQGSNPGGV FTMWNE* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Master regulator of basal/root fate. Essential for root quiescent center (QC) and columella specification, stem cell activity, as well as for establishment of the stem cell niche during embryogenesis. Modulates the root polar auxin transport by regulating the distribution of PIN genes. Essential role in respecifying pattern and polarity in damaged roots. Direct target of the transcriptional corepressor TPL. Expression levels and patterns regulated post-transcriptionally by root meristem growth factors (RGFs). {ECO:0000250, ECO:0000269|PubMed:15454085, ECO:0000269|PubMed:15635403, ECO:0000269|PubMed:16424342, ECO:0000269|PubMed:20190735}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa17g089940.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By auxin accumulation. {ECO:0000269|PubMed:15454085}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY506550 | 0.0 | AY506550.1 Arabidopsis thaliana PLETHORA2 (PLT2) mRNA, complete cds. | |||
GenBank | BT020277 | 0.0 | BT020277.1 Arabidopsis thaliana At1g51190 mRNA, complete cds. | |||
GenBank | BT020460 | 0.0 | BT020460.1 Arabidopsis thaliana At1g51190 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010479579.1 | 0.0 | PREDICTED: AP2-like ethylene-responsive transcription factor PLT2 | ||||
Swissprot | Q5YGP7 | 0.0 | PLET2_ARATH; AP2-like ethylene-responsive transcription factor PLT2 | ||||
TrEMBL | R0GTX3 | 0.0 | R0GTX3_9BRAS; Uncharacterized protein | ||||
STRING | XP_010479579.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3015 | 27 | 67 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G51190.1 | 1e-154 | AP2 family protein |