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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa16g042310.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | ERF | ||||||||
Protein Properties | Length: 355aa MW: 38444.9 Da PI: 7.3795 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 65 | 1.5e-20 | 165 | 214 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr+++ +g+WvAeIr p++ r+r +lg+f+taeeAa a+++a+ kl+g Csa16g042310.1 165 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDTAEEAALAYDKAAYKLRG 214 59******9.**********955...5*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.33E-33 | 164 | 224 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 4.7E-32 | 165 | 223 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.94E-23 | 165 | 223 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 1.0E-37 | 165 | 228 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.169 | 165 | 222 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.4E-11 | 166 | 177 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.4E-14 | 166 | 214 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.4E-11 | 188 | 204 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 355 aa Download sequence Send to blast |
MAAAMNLYSS SRTFQDSFGG GGGELMDALV PFIKSVSDDS PTSSSSAFLH PAASASAFSL 60 PPFPGYYPVH DDCSFLTQPF SYGSDLLQQT GSSSLIGLNN LSSSQIHQIQ SQIHHPLPPP 120 HHTTNNSNSF SNLLSPKPLM MKQSGVAGSC FAYGSGVLPP KPTKLYRGVR QRHWGKWVAE 180 IRLPRNRTRL WLGTFDTAEE AALAYDKAAY KLRGDFARLN FPNLRHNGSH IGGDFGEYKP 240 LHSSVDAKLE AICKSMAETQ KQDKSTTKSS SKKRGSSVKT GKVVSSPDLS SEKVKSEEKS 300 PSIAGSPPFE ESAAGSSPLS DLTFADPEEP PQWNETFSLE KYPSYEIDWD SILA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 5e-21 | 164 | 222 | 1 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa16g042310.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC009243 | 0.0 | AC009243.3 Genomic sequence for Arabidopsis thaliana BAC F28K19 from chromosome I, complete sequence. | |||
GenBank | AY150468 | 0.0 | AY150468.1 Arabidopsis thaliana putative AP2 domain containing protein (At1g78080) mRNA, complete cds. | |||
GenBank | CP002684 | 0.0 | CP002684.1 Arabidopsis thaliana chromosome 1 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010472009.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor RAP2-4-like | ||||
Swissprot | Q8H1E4 | 0.0 | RAP24_ARATH; Ethylene-responsive transcription factor RAP2-4 | ||||
TrEMBL | R0IB56 | 0.0 | R0IB56_9BRAS; Uncharacterized protein | ||||
STRING | XP_010472009.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2716 | 26 | 70 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G78080.1 | 1e-124 | related to AP2 4 |
Publications ? help Back to Top | |||
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