PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa16g027000.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

TCP

Protein Properties

Length: 306aa MW: 34285.9 Da PI: 4.6187

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa16g027000.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	79.1	1.2e-24	83	125	2	44
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkd 44 a+kkdrhskihT++g+RdRRvRls+ +a++fFdLqd+LGfdk+ Csa16g027000.1 83 AVKKDRHSKIHTAQGLRDRRVRLSIGVARQFFDLQDMLGFDKA 125 89***************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	3.8E-22	84	125	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	19.429	85	143	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 306 aa Download sequence Send to blast
MMSSSKNDGS NNGVYPLSFY LSSLPGHQDI IRNPYNQQLT ASPRQMVSSV PKSLIDYMPF 60 NSNDAVNQQG FVLPELSREI KKAVKKDRHS KIHTAQGLRD RRVRLSIGVA RQFFDLQDML 120 GFDKANFGDN RGDVEEEVEE EEDEDGDNSL VYGSSPESCG KKVVCEVKKA DKRKKNNELS 180 NISSKGSRNN LETISDITQS ETLDSFKRSI FSNEGEEMTH FFYKETIGEF GNQESISTKM 240 KINMPTNMDQ SYNQDTGAFM LIDQGSSSNY STIDLPLVDY NYEQNPFVDQ TFCAVTDTSF 300 PGGLP*

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in petal morphogenesis. {ECO:0000269\|PubMed:17940055}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa16g027000.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC189200	1e-105	AC189200.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB005J17, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019083210.1	0.0	PREDICTED: transcription factor TCP1-like
Swissprot	Q9FYG7	1e-116	TCP1_ARATH; Transcription factor TCP1
TrEMBL	R0GHY5	1e-152	R0GHY5_9BRAS; Uncharacterized protein
STRING	XP_010415290.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6733	27	44

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G67260.1	1e-112	TCP family protein

Publications ? help Back to Top
Mazur MJ, et al. Arabidopsis TCP Transcription Factors Interact with the SUMO Conjugating Machinery in Nuclear Foci. Front Plant Sci, 2017. 8: p. 2043 [PMID:29250092]