 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Csa14g039330.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
|
| Family |
Trihelix |
| Protein Properties |
Length: 222aa MW: 26385 Da PI: 10.0198 |
| Description |
Trihelix family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Csa14g039330.1 | genome | CSGP | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | trihelix | 59.4 | 9.1e-19 | 103 | 191 | 2 | 73 |
trihelix 2 WtkqevlaLiearremeerlrrgk.................lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrts 73
Wt +e+++Liea++ ++er r++ ++ +W+++ ++++++g+ rs++qC++kw+nl ++ykk++e e++r +
Csa14g039330.1 103 WTLNETMVLIEAKKMDDERRMRRSiglpppeqqqdsrssnkPAELRWKWIEDYCWRKGCMRSQNQCNDKWDNLMRDYKKVREYERRRVE 191
**************6666666554455555556666666558999****************************************9843 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 222 aa
Download sequence Send
to blast |
MADQSGGLVM MREYRKGNWT LNETMVLIEA KKMDDERRMR RSIGLPPPEQ QQDSRSSNKP 60
AELRWKWIED YCWRKGYYFK KKKNMADQSG GLVMMREYRK GNWTLNETMV LIEAKKMDDE 120
RRMRRSIGLP PPEQQQDSRS SNKPAELRWK WIEDYCWRKG CMRSQNQCND KWDNLMRDYK 180
KVREYERRRV ESSFTAAESS SSSAAAAAAS AGDTPSYWKM EK
|
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AC007654 | 1e-137 | AC007654.2 Genomic sequence for Arabidopsis thaliana BAC T19E23 from chromosome I, complete sequence. |
| GenBank | AK229384 | 1e-137 | AK229384.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL16-62-O19. |
| GenBank | CP002684 | 1e-137 | CP002684.1 Arabidopsis thaliana chromosome 1 sequence. |
