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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa12g053330.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | ARR-B | ||||||||
Protein Properties | Length: 673aa MW: 73545.5 Da PI: 6.7256 | ||||||||
Description | ARR-B family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 90.8 | 1.2e-28 | 212 | 265 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kpr++W+ eLH++Fv av+qL G +kA+Pk+ile+m+v+gLt+e+v+SHLQkYR+ Csa12g053330.1 212 KPRVVWSVELHQQFVAAVNQL-GVDKAVPKKILEMMNVPGLTRENVASHLQKYRI 265 79*******************.********************************7 PP | |||||||
2 | Response_reg | 75.1 | 2.7e-25 | 25 | 133 | 1 | 109 |
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTT CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaG 93 vl+vdD+p+ +++l+++l y +v+ + +e al ll++++ +D+++ D+ mp+mdG++ll++ e +lp+i+++a ++++ +l+ + G Csa12g053330.1 25 VLVVDDDPTCLMILERMLMTCLY-RVTKCNRAELALSLLRKNKhgFDIVISDVHMPDMDGFKLLEHVGLEM-DLPVIMMSADDSKSVVLKGVTHG 117 89*********************.***************888889**********************6644.8********************** PP ESEEEESS--HHHHHH CS Response_reg 94 akdflsKpfdpeelvk 109 a d+l Kp+ +e+l + Csa12g053330.1 118 AVDYLIKPVRIEALKN 133 ************9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF036392 | 6.0E-198 | 7 | 664 | IPR017053 | Response regulator B-type, plant |
SuperFamily | SSF52172 | 3.56E-34 | 22 | 146 | IPR011006 | CheY-like superfamily |
Gene3D | G3DSA:3.40.50.2300 | 8.1E-40 | 22 | 164 | No hit | No description |
SMART | SM00448 | 1.8E-29 | 23 | 135 | IPR001789 | Signal transduction response regulator, receiver domain |
PROSITE profile | PS50110 | 40.626 | 24 | 139 | IPR001789 | Signal transduction response regulator, receiver domain |
Pfam | PF00072 | 5.6E-22 | 25 | 133 | IPR001789 | Signal transduction response regulator, receiver domain |
CDD | cd00156 | 2.05E-26 | 26 | 138 | No hit | No description |
PROSITE profile | PS51294 | 11.323 | 209 | 268 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 7.35E-20 | 210 | 269 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 6.2E-30 | 211 | 270 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.8E-24 | 212 | 265 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 1.0E-8 | 214 | 264 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009873 | Biological Process | ethylene-activated signaling pathway | ||||
GO:0010082 | Biological Process | regulation of root meristem growth | ||||
GO:0010119 | Biological Process | regulation of stomatal movement | ||||
GO:0010150 | Biological Process | leaf senescence | ||||
GO:0071368 | Biological Process | cellular response to cytokinin stimulus | ||||
GO:0080113 | Biological Process | regulation of seed growth | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 673 aa Download sequence Send to blast |
MINPGHGRGP DSGTNSDPFP AGLRVLVVDD DPTCLMILER MLMTCLYRVT KCNRAELALS 60 LLRKNKHGFD IVISDVHMPD MDGFKLLEHV GLEMDLPVIM MSADDSKSVV LKGVTHGAVD 120 YLIKPVRIEA LKNIWQHVVR KKRNEWNVSE HSGGSIEDTG GDRDMQQPRE DADNNSSSVN 180 EGNWRSSSSR KRKEGEVDDQ GDDKEDTSSL KKPRVVWSVE LHQQFVAAVN QLGVDKAVPK 240 KILEMMNVPG LTRENVASHL QKYRIYLRRL GGVSQHQGNM NHSFMTGQDP SFGPLSSLNG 300 FDLQALAVVG QLPAQSLAQL QAAGLGRSSL IKPGMSGSPL VDQRSIFNFE NPKIRFGDGH 360 GQTINNGNKQ MSLLHGVPTG MEPKQFAGSS HMRVQQQMAG MRPGQNVQSS GMMLPLADHL 420 PRGGTSMLSS LGQQQPMFST SVSRRSDLTG AVRNGIPETN NRVVPATHSV FNNFPADLPH 480 NNFPLASAPG ISIPVSASYQ EEVNSSDAKG GSSAATAGFG NPSYDIFNDF PQQQQHNSKL 540 NDWDMRNIGL VYSHQDTAAA SAGFSTSEAY SSSSMQRKRR ETDATVVTAH GQNQQPLSRS 600 LNHLNHVFMD GGSVRVKSER VAETVTCPPA TTLFHEQYHQ EDLMSALLKQ EGIPSADNEF 660 DFDGYSIDNI PV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1irz_A | 7e-22 | 208 | 270 | 1 | 63 | ARR10-B |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins. Involved in the expression of nuclear genes for components of mitochondrial complex I. Promotes cytokinin-mediated leaf longevity. Involved in the ethylene signaling pathway in an ETR1-dependent manner and in the cytokinin signaling pathway. {ECO:0000269|PubMed:11370868, ECO:0000269|PubMed:11574878, ECO:0000269|PubMed:15282545, ECO:0000269|PubMed:16407152}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00054 | PBM | Transfer from AT4G16110 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa12g053330.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | DQ473521 | 0.0 | DQ473521.1 Arabidopsis thaliana ARR2 (ARR2) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010449851.1 | 0.0 | PREDICTED: two-component response regulator ARR2-like isoform X1 | ||||
Swissprot | Q9ZWJ9 | 0.0 | ARR2_ARATH; Two-component response regulator ARR2 | ||||
TrEMBL | R0FAB4 | 0.0 | R0FAB4_9BRAS; Two-component response regulator | ||||
STRING | XP_010449851.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2403 | 27 | 73 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G16110.1 | 0.0 | response regulator 2 |