PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa12g053330.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family ARR-B
Protein Properties Length: 673aa    MW: 73545.5 Da    PI: 6.7256
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa12g053330.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like90.81.2e-28212265155
         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                     kpr++W+ eLH++Fv av+qL G +kA+Pk+ile+m+v+gLt+e+v+SHLQkYR+
  Csa12g053330.1 212 KPRVVWSVELHQQFVAAVNQL-GVDKAVPKKILEMMNVPGLTRENVASHLQKYRI 265
                     79*******************.********************************7 PP
2Response_reg75.12.7e-25251331109
                     EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTT CS
    Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaG 93 
                     vl+vdD+p+ +++l+++l    y +v+ +  +e al ll++++  +D+++ D+ mp+mdG++ll++   e  +lp+i+++a ++++ +l+ +  G
  Csa12g053330.1  25 VLVVDDDPTCLMILERMLMTCLY-RVTKCNRAELALSLLRKNKhgFDIVISDVHMPDMDGFKLLEHVGLEM-DLPVIMMSADDSKSVVLKGVTHG 117
                     89*********************.***************888889**********************6644.8********************** PP

                     ESEEEESS--HHHHHH CS
    Response_reg  94 akdflsKpfdpeelvk 109
                     a d+l Kp+ +e+l +
  Csa12g053330.1 118 AVDYLIKPVRIEALKN 133
                     ************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0363926.0E-1987664IPR017053Response regulator B-type, plant
SuperFamilySSF521723.56E-3422146IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23008.1E-4022164No hitNo description
SMARTSM004481.8E-2923135IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011040.62624139IPR001789Signal transduction response regulator, receiver domain
PfamPF000725.6E-2225133IPR001789Signal transduction response regulator, receiver domain
CDDcd001562.05E-2626138No hitNo description
PROSITE profilePS5129411.323209268IPR017930Myb domain
SuperFamilySSF466897.35E-20210269IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.2E-30211270IPR009057Homeodomain-like
TIGRFAMsTIGR015572.8E-24212265IPR006447Myb domain, plants
PfamPF002491.0E-8214264IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009873Biological Processethylene-activated signaling pathway
GO:0010082Biological Processregulation of root meristem growth
GO:0010119Biological Processregulation of stomatal movement
GO:0010150Biological Processleaf senescence
GO:0071368Biological Processcellular response to cytokinin stimulus
GO:0080113Biological Processregulation of seed growth
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 673 aa     Download sequence    Send to blast
MINPGHGRGP DSGTNSDPFP AGLRVLVVDD DPTCLMILER MLMTCLYRVT KCNRAELALS  60
LLRKNKHGFD IVISDVHMPD MDGFKLLEHV GLEMDLPVIM MSADDSKSVV LKGVTHGAVD  120
YLIKPVRIEA LKNIWQHVVR KKRNEWNVSE HSGGSIEDTG GDRDMQQPRE DADNNSSSVN  180
EGNWRSSSSR KRKEGEVDDQ GDDKEDTSSL KKPRVVWSVE LHQQFVAAVN QLGVDKAVPK  240
KILEMMNVPG LTRENVASHL QKYRIYLRRL GGVSQHQGNM NHSFMTGQDP SFGPLSSLNG  300
FDLQALAVVG QLPAQSLAQL QAAGLGRSSL IKPGMSGSPL VDQRSIFNFE NPKIRFGDGH  360
GQTINNGNKQ MSLLHGVPTG MEPKQFAGSS HMRVQQQMAG MRPGQNVQSS GMMLPLADHL  420
PRGGTSMLSS LGQQQPMFST SVSRRSDLTG AVRNGIPETN NRVVPATHSV FNNFPADLPH  480
NNFPLASAPG ISIPVSASYQ EEVNSSDAKG GSSAATAGFG NPSYDIFNDF PQQQQHNSKL  540
NDWDMRNIGL VYSHQDTAAA SAGFSTSEAY SSSSMQRKRR ETDATVVTAH GQNQQPLSRS  600
LNHLNHVFMD GGSVRVKSER VAETVTCPPA TTLFHEQYHQ EDLMSALLKQ EGIPSADNEF  660
DFDGYSIDNI PV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A7e-22208270163ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins. Involved in the expression of nuclear genes for components of mitochondrial complex I. Promotes cytokinin-mediated leaf longevity. Involved in the ethylene signaling pathway in an ETR1-dependent manner and in the cytokinin signaling pathway. {ECO:0000269|PubMed:11370868, ECO:0000269|PubMed:11574878, ECO:0000269|PubMed:15282545, ECO:0000269|PubMed:16407152}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00054PBMTransfer from AT4G16110Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa12g053330.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ4735210.0DQ473521.1 Arabidopsis thaliana ARR2 (ARR2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010449851.10.0PREDICTED: two-component response regulator ARR2-like isoform X1
SwissprotQ9ZWJ90.0ARR2_ARATH; Two-component response regulator ARR2
TrEMBLR0FAB40.0R0FAB4_9BRAS; Two-component response regulator
STRINGXP_010449851.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM24032773
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16110.10.0response regulator 2
Publications ? help Back to Top
  1. Takahashi N, et al.
    Cytokinins control endocycle onset by promoting the expression of an APC/C activator in Arabidopsis roots.
    Curr. Biol., 2013. 23(18): p. 1812-7
    [PMID:24035544]
  2. Ge XM, et al.
    Heterotrimeric G protein mediates ethylene-induced stomatal closure via hydrogen peroxide synthesis in Arabidopsis.
    Plant J., 2015. 82(1): p. 138-50
    [PMID:25704455]
  3. Takahashi N,Umeda M
    Cytokinins promote onset of endoreplication by controlling cell cycle machinery.
    Plant Signal Behav, 2014. 9(8): p. e29396
    [PMID:25763620]
  4. Kobayashi K, et al.
    Shoot Removal Induces Chloroplast Development in Roots via Cytokinin Signaling.
    Plant Physiol., 2017. 173(4): p. 2340-2355
    [PMID:28193764]
  5. Arnaud D, et al.
    Cytokinin-Mediated Regulation of Reactive Oxygen Species Homeostasis Modulates Stomatal Immunity in Arabidopsis.
    Plant Cell, 2017. 29(3): p. 543-559
    [PMID:28254779]
  6. Zhang TQ, et al.
    A Two-Step Model for de Novo Activation of WUSCHEL during Plant Shoot Regeneration.
    Plant Cell, 2017. 29(5): p. 1073-1087
    [PMID:28389585]
  7. Meng WJ, et al.
    Type-B ARABIDOPSIS RESPONSE REGULATORs Specify the Shoot Stem Cell Niche by Dual Regulation of WUSCHEL.
    Plant Cell, 2017. 29(6): p. 1357-1372
    [PMID:28576846]
  8. Zhang F,May A,Irish VF
    Type-B ARABIDOPSIS RESPONSE REGULATORs Directly Activate WUSCHEL.
    Trends Plant Sci., 2017. 22(10): p. 815-817
    [PMID:28886911]
  9. Takatsuka H,Higaki T,Umeda M
    Actin Reorganization Triggers Rapid Cell Elongation in Roots.
    Plant Physiol., 2018. 178(3): p. 1130-1141
    [PMID:30185441]