PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa12g053170.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | CAMTA | ||||||||
Protein Properties | Length: 966aa MW: 109299 Da PI: 7.1178 | ||||||||
Description | CAMTA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CG-1 | 162.4 | 8.1e-51 | 30 | 146 | 3 | 118 |
CG-1 3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqr 96 +e +rwl+++ei+a+L n++ +++ ++ + pksg+++L++rk++r+frkDG++wkkkkdgkt++E+he+LKvg+ e +++yYah+++nptf r Csa12g053170.1 30 DEaYTRWLRPNEIHALLCNHTFFTINVKPVNLPKSGTIVLFDRKMLRNFRKDGHNWKKKKDGKTIKEAHEHLKVGNEERIHVYYAHGNDNPTFVR 124 45589****************************************************************************************** PP CG-1 97 rcywlLeeelekivlvhylevk 118 rcywlL++++e+ivlvhy+e++ Csa12g053170.1 125 RCYWLLDKSQEHIVLVHYRETH 146 *******************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51437 | 76.279 | 25 | 151 | IPR005559 | CG-1 DNA-binding domain |
SMART | SM01076 | 1.3E-72 | 28 | 146 | IPR005559 | CG-1 DNA-binding domain |
Pfam | PF03859 | 8.0E-45 | 32 | 144 | IPR005559 | CG-1 DNA-binding domain |
SuperFamily | SSF81296 | 2.94E-12 | 372 | 458 | IPR014756 | Immunoglobulin E-set |
CDD | cd00204 | 2.49E-13 | 558 | 668 | No hit | No description |
Gene3D | G3DSA:1.25.40.20 | 3.2E-15 | 559 | 671 | IPR020683 | Ankyrin repeat-containing domain |
Pfam | PF12796 | 1.0E-6 | 559 | 638 | IPR020683 | Ankyrin repeat-containing domain |
SuperFamily | SSF48403 | 2.49E-15 | 567 | 679 | IPR020683 | Ankyrin repeat-containing domain |
PROSITE profile | PS50297 | 13.761 | 576 | 641 | IPR020683 | Ankyrin repeat-containing domain |
PROSITE profile | PS50088 | 11.808 | 609 | 641 | IPR002110 | Ankyrin repeat |
SMART | SM00248 | 2.7E-6 | 609 | 638 | IPR002110 | Ankyrin repeat |
PROSITE profile | PS50096 | 6.614 | 802 | 828 | IPR000048 | IQ motif, EF-hand binding site |
SMART | SM00015 | 260 | 817 | 839 | IPR000048 | IQ motif, EF-hand binding site |
SMART | SM00015 | 5.3E-4 | 840 | 862 | IPR000048 | IQ motif, EF-hand binding site |
PROSITE profile | PS50096 | 9.761 | 841 | 865 | IPR000048 | IQ motif, EF-hand binding site |
SMART | SM00015 | 6.8 | 916 | 938 | IPR000048 | IQ motif, EF-hand binding site |
PROSITE profile | PS50096 | 8.37 | 917 | 946 | IPR000048 | IQ motif, EF-hand binding site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 966 aa Download sequence Send to blast |
MAGVGSGKLI GSEIHGFHTL QDLDIQTMLD EAYTRWLRPN EIHALLCNHT FFTINVKPVN 60 LPKSGTIVLF DRKMLRNFRK DGHNWKKKKD GKTIKEAHEH LKVGNEERIH VYYAHGNDNP 120 TFVRRCYWLL DKSQEHIVLV HYRETHEAQA APATPGNSYS SSISDLSPKL VAEDINSGVR 180 NTCNTGFEVR SNSLGSRNHE IRLHEINTLD WDELLVPADI SNQSHPTEED MLYFTEQLQT 240 APRGSTKQGY HLAGYNGSVD IPSYPGLEDP VYQNNNSCGA GEFSNQHVHC GVESNLQSRD 300 SSATVADQPG DAMLNNGFGS QDSFGRWVNN FISDSPGSVD DPSLEAVYTP GQESSTTAVF 360 HSHSNIPEQV FNITDVSPAW AFSTEKTKIL VTGFFHDSFQ HFGRSNLFCI CGELRVPAEF 420 LQLGVYRCFL PPQSPGVVNL YLSADGNKPI SQLFSFEHRS VPVIEKAIPQ DDQLYKWEEF 480 EFQVRLAHLL FTSSNKISVL TSKISPDNLL EAKKLASRTS HLLNSWAYLM KSIQANEVPF 540 DQARDHLFEL TLKNRLKEWL LEKVIENRNT KEYDSKGLGV IHLCAVLGYT WSILLFSWAN 600 ISLDFRDKHG WTALHWAAYY GREKMVAALL SAGARPNLVT DPTKEFLGGC TAADLAQQKG 660 YEGLAAFLAE KCLVAQFKDM QMAGNITGNL ETIKAEQASN LGNSNEDEQS LKDTLAAYRT 720 AAEAAARIQG AFREHELKAE QASNLGNSNE DEQSLKDTLA AYRTAAEAAA RIQGAFREHE 780 LKVRSSAVRF ASKEEEAKNI IAAMKIQHAF RNFEVRRKIA AAARIQYRFQ TWKMRREFLN 840 MRKKAIRIQA AFRGFQVRRQ YQKITWSVGV LEKAILRWRL KRKGFRGLQV SQPEEKEGGE 900 EVEDFYKTSQ KQAEERLERS VVKVQAMFRS KKAQQDYRRM KLAHEEAQLE YDGMQELDQM 960 AMEES* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator (PubMed:14581622). Binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved in response to cold. Contributes together with CAMTA3 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:28351986). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:14581622, ECO:0000269|PubMed:28351986, ECO:0000305|PubMed:11925432}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa12g053170.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By heat shock, UVB, wounding, abscisic acid, H(2)O(2) and salicylic acid. {ECO:0000269|PubMed:12218065}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY128295 | 0.0 | AY128295.1 Arabidopsis thaliana AT4g16150/dl4115w mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010449842.1 | 0.0 | PREDICTED: calmodulin-binding transcription activator 5 | ||||
Swissprot | O23463 | 0.0 | CMTA5_ARATH; Calmodulin-binding transcription activator 5 | ||||
TrEMBL | R0GWD2 | 0.0 | R0GWD2_9BRAS; Uncharacterized protein | ||||
STRING | XP_010449842.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4021 | 27 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G16150.1 | 0.0 | calmodulin binding;transcription regulators |
Publications ? help Back to Top | |||
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